Nothing
### A dmat version for automatically reducing K methods.
pmclust.reduceK.dmat <- function(K = 2, algorithm = .PMC.CT$algorithm){
# Get an initial start.
PARAM.org <- set.global.dmat(K = K)
PARAM.org <- try(initial.em.dmat(PARAM.org), silent = TRUE)
# Ensure the initial is good. Warning: This may take forever to run!
repeat{
if(class(PARAM.org) == "try-error"){
PARAM.org <- set.global.dmat(K = K)
PARAM.org <- try(initial.em.dmat(PARAM.org), silent = TRUE)
} else{
break
}
}
# Update steps.
method.step <- switch(algorithm[1],
"em.dmat" = em.step.dmat,
# "aecm.dmat" = aecm.step.dmat,
# "apecm.dmat" = apecm.step.dmat,
# "apecma.dmat" = apecma.step.dmat,
NULL)
if(comm.all(is.null(method.step))){
comm.stop("Algorithm is not found.")
}
PARAM.new <- try(method.step(PARAM.org), silent = TRUE)
em.update.class.dmat()
N.CLASS <- get.N.CLASS.dmat(K)
# Reduce K if error occurs.
repeat{
if((class(PARAM.new) == "try-error" ||
.pmclustEnv$CHECK$convergence == 99) &&
K > 1){
# Drop specific i.k if available or
# drop the smallest class or
# drop the class with the smallest eta among all small classes or
# drop all classes with 0 elements.
if(.pmclustEnv$CONTROL$stop.at.fail && .pmclustEnv$FAIL.i.k > 0){
i.k <- .pmclustEnv$FAIL.i.k
} else{
i.k <- which(N.CLASS == min(N.CLASS))
}
if(i.k > 1 && min(N.CLASS) > 0){
i.k <- i.k[which.min(PARAM.new$ETA[i.k])]
}
K <- K - length(i.k)
comm.cat("- Reduce: ", K, "\n")
# Initial global storage.
PARAM.org <- set.global.dmat(K = K)
# Replacing PARAM.org by previous PARAM.new.
PARAM.org$ETA <- PARAM.new$ETA[-i.k] / sum(PARAM.new$ETA[-i.k])
PARAM.org$log.ETA <- log(PARAM.org$ETA)
PARAM.org$MU <- matrix(PARAM.new$MU[, -i.k], ncol = K)
PARAM.org$SIGMA <- PARAM.new$SIGMA[-i.k]
# Update steps.
e.step.dmat(PARAM.org)
PARAM.new <- try(method.step(PARAM.org), silent = TRUE)
em.update.class.dmat()
N.CLASS <- get.N.CLASS.dmat(K)
} else{
break
}
}
# For return.
ret <- list(algorithm = algorithm[1],
param = PARAM.new,
class = .pmclustEnv$CLASS.spmd,
n.class = N.CLASS,
check = .pmclustEnv$CHECK)
ret
} # End of pmclust.reduceK.dmat().
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