View source: R/population_results.R
population_results | R Documentation |
Modular functions for the population simulator for initializing, calculating and collecting simulator results.
population_results(
replicates,
time_steps,
coordinates,
initial_abundance,
results_selection = NULL,
result_stages = NULL
)
replicates |
Number of replicate simulation runs. |
time_steps |
Number of simulation time steps. |
coordinates |
Data frame (or matrix) of X-Y population coordinates. |
initial_abundance |
Matrix of initial abundances at each stage (in rows) for each population (in columns). |
results_selection |
List of results selection from: "abundance" (default), "ema", "extirpation", "extinction_location", "harvested", "occupancy"; "summarize" (default) or "replicate". |
result_stages |
Array of booleans or numeric (0, 1, 2, ...) for each stage to indicate which stages are included/combined (each unique digit > 0; optionally named) in the results (default is 1 for all stages). |
List of result functions:
initialize_attributes = function())
Constructs and returns an initialized nested list for the selected result attributes.
initialize_replicate = function(results)
Initializes and returns nested result attributes at the start of each replicate.
calculate_at_timestep = function(r, tm, stage_abundance, harvested, results)
Appends and calculates (non-NULL) results and returns nested result attributes at the end of each time step (tm) within replicate (r).
finalize_attributes = function(results)
Finalizes result calculations at the end of the simulation.
coordinates <- array(c(1:4, 4:1), c(7, 2))
initial_abundance <- matrix(c(
7, 13, 0, 26, 0, 39, 47,
2, 0, 6, 8, 0, 12, 13,
0, 3, 4, 6, 0, 9, 10
), nrow = 3, ncol = 7, byrow = TRUE)
results_selection <- c("abundance", "ema", "extirpation",
"extinction_location", "harvested", "occupancy")
result_functions <- population_results(
replicates = 1, time_steps = 10, coordinates, initial_abundance,
results_selection = results_selection, result_stages = c(0, 1, 1)
)
result_functions$initialize_attributes()
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