polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids

Read depth data from genotyping-by-sequencing (GBS) or restriction site-associated DNA sequencing (RAD-seq) are imported and used to make Bayesian probability estimates of genotypes in polyploids or diploids. The genotype probabilities, or genotypes sampled from those probabilties, can then be exported for downstream analysis. 'polyRAD' is described by Clark et al. (2018) <doi:10.1101/380899>.

Package details

AuthorLindsay V. Clark [aut, cre] (<https://orcid.org/0000-0002-3881-9252>), U.S. National Science Foundation [fnd]
MaintainerLindsay V. Clark <[email protected]>
LicenseGPL (>= 2)
URL https://github.com/lvclark/polyRAD
Package repositoryView on CRAN
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polyRAD documentation built on May 1, 2019, 11:17 p.m.