InbreedingFromHindHe | R Documentation |
After running HindHe
and examining the distribution of values
across taxa and loci, InbreedingFromHindHe
can be used to estimate
the inbreeding statistic F from the median or mode value of
Hind/He. The statistic estimated encompasses inbreeding
from all sources, including population structure, self-fertilization, and
preferential mating among relatives. It is intended to be used as input to
the process_isoloci.py
script.
InbreedingFromHindHe(hindhe, ploidy)
hindhe |
A value for Hind/He. It should generally range from zero to one. |
ploidy |
A single integer indicating the ploidy of the population. |
A number indicating the inbreeding statistic F. This is calculated as:
1 - hindhe * ploidy / (ploidy - 1)
Lindsay V. Clark
HindHe
, ExpectedHindHe
,
readProcessSamMulti
, readProcessIsoloci
InbreedingFromHindHe(0.5, 2) InbreedingFromHindHe(0.4, 2) InbreedingFromHindHe(0.5, 4)
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