print.simAutoMarkers: Print objects of class simAutoMarkers

In polySegratio: Simulate and Test Marker Dosage for Dominant Markers in Autopolyploids

Description

Prints an object of S3 class simAutoMarkers

Usage

## S3 method for class 'simAutoMarkers'
print(x, ..., row.index = c(1:min(10,
nrow(x$markers))), col.index = c(1:min(10, ncol(x$markers))) )

## S3 method for class 'simAutoCross'
print(x, ..., row.index = c(1:min(10,
nrow(x$markers))), col.index = c(1:min(10, ncol(x$markers))))

## S3 method for class 'divideAutoMarkers'
print(x, ..., row.index = c(1:10),
  col.index = c(1:10), tabulate.extras = FALSE )

Arguments

x	object of class simAutoMarkers
row.index	which rows to print (Default: first 10)
col.index	which columns to print (Default: first 10)
tabulate.extras	If TRUE then cross–tabulate any axtra columns (Default: FALSE)
...	extra options for printing

Value

None.

Note

Objects of class simAutoMarkers may be produced from by employing the function sim.autoMarkers and the same for sim.autoCross and divide.autoMarkers

Author(s)

Peter Baker [e-mail]

See Also

segRatio, segregationRatios, sim.autoCross, sim.autoMarkers, divide.autoMarkers, print

Examples

## generate data sets
a1 <- sim.autoMarkers(4,c(0.8,0.2))
a2 <- sim.autoMarkers(8,c(0.7,0.2,0.09,0.01),type="homo",n.markers=20,n.individuals=10)

print(a1)
print(a2)

## datasets from crosses
p1 <- sim.autoCross(4, dose.proportion=c(0.7,0.3), n.markers=20, n.indiv=10)
print(p1)
p2 <- sim.autoCross(4, dose.proportion=list(p01=c(0.7,0.3),p10=c(0.7,0.3),p11=c(0.6,0.2,0.2)))
print(p2)

## divide up data from crosses
ss <- divide.autoMarkers(p2$markers)
print(ss)

polySegratio documentation built on May 2, 2019, 7:26 a.m.