Man pages for polySegratioMM
Bayesian Mixture Models for Marker Dosage in Autopolyploids
| calculateDIC | Compute DIC for fitted mixture model |
| diagnosticsJagsMix | MCMC diagnostics for polyploid segregation ratio mixture... |
| DistributionPlotBinomial | Distribution Plot |
| dosagesJagsMix | Compute dosages under specified Bayesian mixture model |
| dumpData | Dumps segregation ratio data to file for subsequent JAGS run |
| hexmarkers | Simulated autopolyploid dominant markers from 200 hexaploid... |
| hexmarkers.overdisp | Simulated overdispersed autopolyploid dominant markers from... |
| mcmcHexRun | Results of MCMC estimation for simulated overdispersed... |
| plotFitted | Plot observed segregation ratios and fitted and theoretical... |
| plot.segratioMCMC | MCMC plots for segregation ratio mixture models |
| polySegratioMM-package | Bayesian Mixture Models for Marker Dosage in Autopolyploids |
| print.dosagesMCMC | Doses from Bayesian mixture model |
| print.runJags | Running JAGS |
| readJags | Read MCMC sample(s) from a JAGS run |
| runJags | Run JAGS to create MCMC sample for segregation ratio mixture... |
| runSegratioMM | Run a Bayesian mixture model for marker dosage with minimal... |
| setControl | Set up controls for a JAGS segregation ratio model run |
| setInits | Set up and dump initial values given the model and prior |
| setModel | Set characteristics of the Bayesian mixture model for dosages |
| setPriors | Set prior distributions for parameters of Bayesian mixture... |
| summary.segratioMCMC | Summary statistics for an segratioMCMC object |
| writeControlFile | Write JAGS .cmd file for running JAGS |
| writeJagsFile | Writes BUGS file for processing by JAGS |
