writeControlFile: Write JAGS .cmd file for running JAGS

In polySegratioMM: Bayesian Mixture Models for Marker Dosage in Autopolyploids

Write JAGS .cmd file for running JAGS

Description

Write JAGS .cmd file to disk

Usage

writeControlFile(jags.control,
     file = paste(jags.control$stem, ".cmd", sep = ""))

Arguments

jags.control	Object of class jagsControl containing MCMC burn in, sample and thinning as well as relavant files for BUGS commands, inits and data
file	JAGS .cmd file name

Value

None.

Author(s)

Peter Baker [e-mail]

See Also

setControl runJags

Examples

## simulate small autooctaploid data set
a1 <- sim.autoMarkers(8,c(0.7,0.2,0.1),n.markers=100,n.individuals=50)
sr <-  segregationRatios(a1$markers)

## set up model with 3 components
x <- setModel(3,8)
x2 <- setPriors(x)

## Not run: 

dumpData(sr, x)
inits <- setInits(x,x2)
dumpInits(inits)
##x.priors <- setPriors(x, "vague")
writeJagsFile(x, x2, stem="test")

small <- setControl(x, burn.in=20, sample=50)
writeControlFile(small)

## End(Not run)

polySegratioMM documentation built on Feb. 25, 2026, 5:08 p.m.