R/data_desc.R

In polyfreqs: Bayesian Population Genomics in Autopolyploids

#' Total reads matrix
#'
#' A dataset of 10 individuals sampled at 2 loci with 20 reads per individual per locus. Used for package testing.
#'
#' @format A 10 x 2 matrix.
#' @usage data(total_reads)
"total_reads"

#' Reference reads matrix
#'
#' A dataset of 10 individuals sampled at 2 loci with
#' reference read counts simulated from a binomial distribution
#' (Eq. 1 in Blischak \emph{et al}.) with an underlying allele frequency of 0.4. Used for package testing.
#'
#' @format A 10 x 2 matrix
#' @usage data(ref_reads)
#' @references Blischak PD, LS Kubatko and AD Wolfe. Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids. \emph{In revision}.
"ref_reads"