This is a generic package that produces "Population Graphs" a graph-theoretic topology based upon conditional genetic covariance. This functionality used to be within the gstudio package, but has been taken out to focus on spatial integration of graph topologies with existing packages like sp, raster, and ggplot2.
|Author||Rodney J. Dyer|
|Date of publication||2014-06-03 01:34:35|
|Maintainer||Rodney J. Dyer <firstname.lastname@example.org>|
|License||GPL (>= 2)|
alt: Sonoran desert altitude.
arapat_mv: Araptus attenuatus data
arapat_pop: Arapat popualtion data
as.popgraph: Converts an object of type matrix or igraph into 'popgraph'
baja: Metadata for Baja Populations.
centroid_distance: This function takes a data set and a group set and returns...
centroid_variance: This function takes a data set and a group set and returns...
congruence_topology: Returns congruence topology
decorate_graph: Merge data into popgraph node-wise
geom_edgelabels: Plotting of a population graph edge labels using ggplot...
geom_edgeset: Plotting of a population graph edge set using ggplot neumonic
geom_nodeset: Plotting of a population graph edge set using ggplot neumonic
lopho: Lophocereus population graph
overlay_popgraph: Convience function to plot edges from 'popgraph'
permute_popgraph: Bootstraps indiviudals to see stability of graph topology.
popgraph: Default constructor for a 'PopulationGraph' object
popgraph-operator-minus: Overload '-' operator for pairs of 'popgraph' objects
popgraph-package: Package for the creation of population graph objects
read.popgraph: Reads in a population graph text file
test_congruence: Returns distance congruence between the two graphs
theme_empty: A blank theme for plotting networks
to_data.frame: Converts 'popgraph' to 'data.frame' based upon node...
to_html: Converts population graph to html file for interactive...
to_json: Converts to json representation
to_kml: Converts population graph to KML file
to_matrix: Matrix conversion for Population Graph
to_pgraph: Converts graph to a pgraph file format
to_SpatialLines: Converts edge set to SpatialLines object
to_SpatialPoints: Translate object into a SpatialPoints object
upiga: Upiga population graph
write_popgraph: Convience function for file exports