This is a generic package that produces "Population Graphs" a graph-theoretic topology based upon conditional genetic covariance. This functionality used to be within the gstudio package, but has been taken out to focus on spatial integration of graph topologies with existing packages like sp, raster, and ggplot2.

Author | Rodney J. Dyer |

Date of publication | 2014-06-03 01:34:35 |

Maintainer | Rodney J. Dyer <rjdyer@vcu.edu> |

License | GPL (>= 2) |

Version | 1.4 |

**alt:** Sonoran desert altitude.

**arapat_mv:** Araptus attenuatus data

**arapat_pop:** Arapat popualtion data

**as.popgraph:** Converts an object of type matrix or igraph into 'popgraph'

**baja:** Metadata for Baja Populations.

**centroid_distance:** This function takes a data set and a group set and returns...

**centroid_variance:** This function takes a data set and a group set and returns...

**congruence_topology:** Returns congruence topology

**decorate_graph:** Merge data into popgraph node-wise

**geom_edgelabels:** Plotting of a population graph edge labels using ggplot...

**geom_edgeset:** Plotting of a population graph edge set using ggplot neumonic

**geom_nodeset:** Plotting of a population graph edge set using ggplot neumonic

**lopho:** Lophocereus population graph

**overlay_popgraph:** Convience function to plot edges from 'popgraph'

**permute_popgraph:** Bootstraps indiviudals to see stability of graph topology.

**popgraph:** Default constructor for a 'PopulationGraph' object

**popgraph-operator-minus:** Overload '-' operator for pairs of 'popgraph' objects

**popgraph-package:** Package for the creation of population graph objects

**read.popgraph:** Reads in a population graph text file

**test_congruence:** Returns distance congruence between the two graphs

**theme_empty:** A blank theme for plotting networks

**to_data.frame:** Converts 'popgraph' to 'data.frame' based upon node...

**to_html:** Converts population graph to html file for interactive...

**to_json:** Converts to json representation

**to_kml:** Converts population graph to KML file

**to_matrix:** Matrix conversion for Population Graph

**to_pgraph:** Converts graph to a pgraph file format

**to_SpatialLines:** Converts edge set to SpatialLines object

**to_SpatialPoints:** Translate object into a SpatialPoints object

**upiga:** Upiga population graph

**write_popgraph:** Convience function for file exports

popgraph

popgraph/inst

popgraph/inst/tests

popgraph/inst/tests/test-popgraph.R

popgraph/inst/tests/test-to_json.R

popgraph/inst/tests/test-to_kml.R

popgraph/inst/tests/test-ops_popgraph.R

popgraph/inst/tests/test-to_matrix.R

popgraph/inst/tests/test-overlay_popgraph.R

popgraph/inst/tests/test-to_html.R

popgraph/inst/tests/test-to_pgraph.R

popgraph/inst/tests/test-as_popgraph.R

popgraph/inst/tests/test-congruence_topology.R

popgraph/inst/tests/test-to_SpatialLines.R

popgraph/inst/tests/test-write_popgraph.R

popgraph/inst/tests/test-read_popgraph.R

popgraph/inst/tests/test-to_SpatialPoints.R

popgraph/inst/tests/test-decorate_popgraph.R

popgraph/inst/tests/test-bootstrap_popgraph.R

popgraph/inst/tests/test-test_congruence.R

popgraph/inst/extdata

popgraph/inst/extdata/d3footer.html

popgraph/inst/extdata/lopho.pgraph

popgraph/inst/extdata/arapat_pops.rda

popgraph/inst/extdata/arapat_mv.rda

popgraph/inst/extdata/d3header.html

popgraph/tests

popgraph/tests/run-testthat-popgraph.R

popgraph/NAMESPACE

popgraph/NEWS

popgraph/data

popgraph/data/upiga.rda

popgraph/data/lopho.rda

popgraph/data/baja.rda

popgraph/data/alt.rda

popgraph/R

popgraph/R/to_data.frame.R
popgraph/R/geom_edgeset.R
popgraph/R/geom_edgelabels.R
popgraph/R/centroid_variance.R
popgraph/R/theme_empty.R
popgraph/R/test_congruence.R
popgraph/R/to_kml.R
popgraph/R/to_SpatialLines.R
popgraph/R/as_popgraph.R
popgraph/R/centroid_distance.R
popgraph/R/to_pgraph.R
popgraph/R/to_html.R
popgraph/R/to_json.R
popgraph/R/write_popgraph.R
popgraph/R/permute_popgraph.R
popgraph/R/geom_nodeset.R
popgraph/R/overlay_popgraph.R
popgraph/R/ops_popgraph.R
popgraph/R/to_SpatialPoints.R
popgraph/R/congruence_topology.R
popgraph/R/to_matrix.R
popgraph/R/popgraph-package.R
popgraph/R/decorate_graph.R
popgraph/R/popgraph.R
popgraph/R/read_popgraph.R
popgraph/vignettes

popgraph/vignettes/Popgraph.tex

popgraph/MD5

popgraph/DESCRIPTION

popgraph/man

popgraph/man/popgraph-operator-minus.Rd
popgraph/man/popgraph-package.Rd
popgraph/man/geom_edgelabels.Rd
popgraph/man/to_data.frame.Rd
popgraph/man/lopho.Rd
popgraph/man/congruence_topology.Rd
popgraph/man/permute_popgraph.Rd
popgraph/man/arapat_mv.Rd
popgraph/man/to_SpatialLines.Rd
popgraph/man/geom_edgeset.Rd
popgraph/man/baja.Rd
popgraph/man/centroid_variance.Rd
popgraph/man/to_pgraph.Rd
popgraph/man/decorate_graph.Rd
popgraph/man/geom_nodeset.Rd
popgraph/man/overlay_popgraph.Rd
popgraph/man/to_html.Rd
popgraph/man/centroid_distance.Rd
popgraph/man/to_json.Rd
popgraph/man/test_congruence.Rd
popgraph/man/to_kml.Rd
popgraph/man/write_popgraph.Rd
popgraph/man/as.popgraph.Rd
popgraph/man/upiga.Rd
popgraph/man/popgraph.Rd
popgraph/man/theme_empty.Rd
popgraph/man/arapat_pop.Rd
popgraph/man/to_SpatialPoints.Rd
popgraph/man/to_matrix.Rd
popgraph/man/read.popgraph.Rd
popgraph/man/alt.Rd
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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