| abundtest | Parametric bootstrap test for clustering in abundance... |
| allele2zeroone | Converts alleleobject into binary matrix |
| alleleconvert | Format conversion for codominant marker data |
| alleledist | Shared allele distance for diploid loci |
| alleleinit | Diploid loci matrix initialization |
| allelepaircomp | Internal: compares two pairs of alleles |
| autoconst | Spatial autocorrelation parameter estimation |
| build.charmatrix | Internal: create character matrix out of allele list |
| build.ext.nblist | Internal: generates neighborhood list for diploid loci |
| build.nblist | Generate spatial weights from prabclus neighborhood list |
| cluspop.nb | Simulation of presence-absence matrices (clustered) |
| communities | Construct communities from individuals |
| communitydist | Distances between communities |
| comp.test | Compare species clustering and species groups |
| concomp | Connectivity components of an undirected graph |
| conregmat | Connected regions per species |
| coord2dist | Geographical coordinates to distances |
| crmatrix | Region-wise cluster membership |
| dicedist | Dice distance matrix |
| distratio | Distance ratio test statistics for distance based clustering |
| geco | geco distance matrix |
| geo2neighbor | Neighborhood list from geographical distance |
| homogen.test | Classical distance-based test for homogeneity against... |
| hprabclust | Clustering of species ranges from presence-absence matrices... |
| incmatrix | Nestedness matrix |
| jaccard | Jaccard distance matrix |
| kulczynski | Kulczynski distance matrix |
| kykladspecreg | Snail presence-absence data from Aegean sea |
| lcomponent | Largest connectivity component |
| lociplots | Visualises clusters of markers vs. species |
| nastats | Missing values statistics for matrix |
| nb | Neighborhood list for Aegean islands |
| nbtest | Test of neighborhood list |
| nn | Mean distance to kth nearest neighbor |
| NNclean | Nearest neighbor based clutter/noise detection |
| phipt | Distances between communities, auxiliary functions |
| piecewiselin | Piecewise linear transformation for distance matrices |
| plotdistreg | Plots for within-groups and between-groups distance... |
| pop.sim | p-value simulation for presence-absence matrices clustering... |
| prabclus-package | prabclus package overview |
| prabclust | Clustering for biotic elements or for species delimitation... |
| prabinit | Presence-absence/abundance matrix initialization |
| prab.sarestimate | Estimates SAR model from log-abundance matrix of prab-object. |
| prabtest | Parametric bootstrap test for clustering in presence-absence... |
| qkulczynski | Quantitative Kulczynski distance matrix |
| randpop.nb | Simulation of presence-absence matrices (non-clustered) |
| regdist | Regression between subsets of dissimilarity matrices |
| regdistbetween | Testing equality of within-groups and between-groups... |
| regdistbetweenone | Testing equality of one within-group and between-two groups... |
| regdistdiff | Regression difference between within-group dissimilarities |
| regdistdiffone | Regression difference within reference group and... |
| regeqdist | Testing equality of two distance-regressions |
| regpop.sar | Simulation of abundance matrices (non-clustered) |
| siskiyou | Herbs of the Siskiyou Mountains |
| specgroups | Average within-group distances for given groups |
| stressvals | Stress values for different dimensions of Kruskal's MDS |
| tetragonula | Microsatellite genetic data of Tetragonula bees |
| toprab | Convert abundance matrix into presence/absence matrix |
| unbuild.charmatrix | Internal: create allele list out of character matrix |
| veronica | Genetic AFLP data of Veronica plants |
| waterdist | Overwater distances between islands in the Aegean sea |
