veronica: Genetic AFLP data of Veronica plants

In prabclus: Functions for Clustering and Testing of Presence-Absence, Abundance and Multilocus Genetic Data

Genetic AFLP data of Veronica plants

Description

0-1 data indicating whether dominant markers are present for 583 different AFLP bands ranging from 61 to 454 bp of 207 plant individuals of Veronica (Pentasepalae) from the Iberian Peninsula and Morocco (Martinez-Ortega et al., 2004).

Usage

data(veronica)

Format

Two objects are generated:

veronica

0-1 matrix with 207 individuals (rows) and 583 AFLP bands (columns).

veronica.coord

a 207*2 matrix. Coordinates of locations of individuals in decimal format, i.e. the first number is latitude (negative values are South), with minutes and seconds converted to fractions. The second number is longitude (negative values are West).

Details

Reads from example data files MartinezOrtega04AFLP.dat, MartinezKoord.dat.

Source

Martinez-Ortega, M. M., L. Delgado, D. C. Albach, J. A. Elena-Rossello, and E. Rico (2004). Species boundaries and phylogeographic patterns in cryptic taxa inferred from AFLP markers: Veronica subgen. Pentasepalae (Scrophulariaceae) in the Western Mediterranean.Syst. Bot. 29, 965-986.

Examples

data(veronica)

prabclus documentation built on Sept. 24, 2024, 5:07 p.m.