NEWS.md

In precommit: Pre-Commit Hooks

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precommit v0.3.2

• parsable-R hook now gives more context on where and how parsing fails (#423).
• fixed R CMD check issues in devel (#425).
• move from experimental to stable (#426).

Thanks to @danielinteractive, @jonocarroll for their contributions.

precommit v0.3.1

User visible changes

• .pre-commit-config.yaml templates now contain hook to validate the pre-commit.ci configuration (#407).
• {git2r} is no longer needed for user side (#417).

Bug fixes

• Fix bug that prevented pkg load outside directories with precommit files (@mpadge, #413).
• Ensure sorting for spell-check hook is case-insensitive on all operating systems. This may re-order your whole inst/WORDLIST (#405).
• hook forbid-to-commit in template .pre-commit-config.yaml has now the correct exclude-files regular expression to ignore .csv, .RData, .Rds, .rds and .Rhistory (#410).

Internals

• options(install.packages.compile.from.source = "never") is used in the CI to avoid failing builds due to missing build-time deps (#412).
• All (R)md files in that repo are now formatted in a pandoc-compliant way (#415).

Thanks to @danielinteractive and @mpadge for their contributions.

precommit v0.3.0

API changes

• The style-files hook now takes ignore-start and ignore-stop arguments, passed to options("styler.ignore_start") and options("styler.ignore_stop"). By default, {styler} defaults are used.
• use_precommit() now exposes the argument autoupdate, defaulting to TRUE (which was the previous behavior). This tells {precommit} whether or not to run autoupdate() as part of the former function invocation (#386).

New features

• New hook no-debug-statement checks for leftover debug() and debugonce() statements in the committed code (#385, @lukasfeick-sw).
• The template .pre-commit-config.yaml does now include the hook file-contents-sorter to sort .Rbuildignore (#366).
• The template .pre-commit-config.yaml default to monthly hook updates (instead of weekly) to avoid notification triggers and git version convolution (#370).
• The codemeta hook was ported to language: r (#350).

Documentation

• Refactor README into new README and a Get started vignette (#388).
• Document advantages of pre-commit in vignette (#379).

Bug fixes

• Don't include R as a dependency with snippet_generate("additional-deps-roxygenize") (#358).
• roxygenize hook now fails if it generates an .Rd file that is not tracked with version control (#363).
• Improved compatibility with {renv} (#359, #375, #400).
• deps-in-desc and parsable-R can now handle code chunk headers with where purl or eval are not literals like TRUE, but variables defined elsewhere in code (#361, #382).
• deps-in-desc now prints the original file (not a tempfile) also for .Rmd and .Rnw files.

Thanks to all people who contributed to this release: \@assignUser, \@danhalligan, \@gravesti, \@hadley, \@KyleDCox, \@lorenzwalthert, \@lukasfeick-sw, \@MarkMc1089, \@pat-s, \@RoyalTS, and \@smingerson.

precommit v0.2.2

This is a maintenance release on the request of CRAN (#337) and to improve experience with the language: r switch conducted in v0.2.0. In particular, note that projects using {renv} and RStudio are not very compatible with hook versions > 0.1.3.9014 and autoupdate() results in downgrading the hook versions (#346).

API Changes

• The argument --no-warn-cache in the style-files and the roxygenize hook is deprecated and will be removed in a future release. Please remove it from your .pre-commit-config.yaml (#340. #341).

Other changes

• style-files hook fails more informatively if required package is not listed in additional_dependencies: (#333).
• configure all git operations to use LF (#337).
• deps-in-desc always excludes README.md (#336).
• Document timeout and other problems with pre-commit.ci (#335).
• simplify roxygenize problem handling (#338).
• More executables on macOS are detected (#344).
• Only hard dependencies are generated with snippet_generate("additional-deps-roxygenize") (#344)
• Fixing more CRAN issues (#348).
• Use RSMP for all packages (#348).

Thanks to all people who contributed to this release:

\@lorenzwalthert, \@pat-s, and \@smingerson.

precommit v0.2.0

This version marks the switch to language: r of all existing hooks. This means two things:

• creation of isolated pre-commit environments: No more manual dependency management for hooks nor conflicts with your global R library and more consistent output of hooks from different collaborators in a project. Thanks to {renv}'s excellent caching, this hardly consumes any space and is fast. This requires the Python package pre-commit >= 2.11.1 (ideally even >= 2.13.0). See *Installation/Update** below (#233, #250, #260, #264, #273, #315, #313, #308, #301, #300, #295, #285, #328).
• support for continuous integration via pre-commit.ci and GitHub Actions), that is, running the pre-commit hooks as part of a CI pipeline. This means that hook passing can be enforced for pull requests, even if the creator did not run the hooks locally. Further, the diff from running the hooks is committed and pushed back to the remote repository. This may fix the failing hook problems in some cases (e.g. style-files). See vignette("ci") for a comparison of the two services (#318).

API changes

• use_precommit() gains a new argument ci defaulting to "native" (for pre-commit) to set up continuous integration. Other allowed values are "gha" (for\ GitHub Actions) or NULL (for no CI).
• The new exported function use_ci(ci = "native") can be used to set up continuous integration for existing repos. The default behavior for ci for both functions is governed by the R option precommit.ci.
• version_precommit() and update_precommit() are new functions to check the version of the installed pre-commit executable and to update it (#197).
• style-files hook gains an argument --cache-root that is passed to options(styler.cache_root = ...) (#305).
• style-files hook now supports the full style_file() API, e.g. you can supply --scope=spaces and similar via args: in your .pre-commit-config.yaml. See the docs for details.
• style-files and roxygenize hooks now warn if there is no permanent {R.cache} cache set up. You can silence the warning with the hook argument --no-warn-cache (#225).

Installation/Update

Please follow the update instructions or installation instructions depending on whether or not you previously used pre-commit.

Major changes

• Because hooks run in a virtual environment and the roxygenize hook runs pkgload::load_all(), you need to list all dependencies of your package in additional_dependencies field in .pre-commit-config.yaml. You will be prompted to add them if they are missing, precommit::snippet_generate("additional-deps-roxygenize") generates the code you can copy/paste (#247, #248, #249).
• the parsable-R hook can now also parse .Rmd files (#325).
• In order to avoid multiple installations of the pre-commit framework, a warning is issued if multiple are found so the user can remove them (#266, #273, #277, #278).
• use_precommit(..., install_hooks = TRUE) is no longer blocking by default. New option precommit.block_install_hooks (defaults to FALSE) governs the behavior (#312).
• Always sort inst/WORDLIST (#303).
• .lintr and .gitlab-ci.yml are not ignored in the spell check hook (#317).
• Warnings are no longer promoted to errors in the styler hook, which is particularly relevant for the apparently random error Unknown or uninitialised column: text (#268).
• deps-in-desc now checks .Rprofile, .Rmd and .Rnw files in addition to .R files (#216).\
• the lintr and styler hook now also check .Rmd, .Rnw and .Rprofile files (#287).
• {renv} infra files are not checked anymore by default in the template config files (#237).
• .png, .jpeg, .pdf and files in .github/workflows are no longer spell-checked in the template config file (#276).

Minor changes

• rename default branch to main (#307).
• Use dev version of {lintr} to reduce total dependencies from 71 to 59 that brings down install time.
• The location of the pre-commit executable is now also recognized on Apple Silicon when installed with Homebrew (#240).
• The location of the pre-commit executable is now also recognized on macOS when installed with pip3 and fs >= 1.5.1 (#330).
• pinning python version to 3.9 for conda until problems related to 3.10 are fixed (#310).
• The cache for the roxygen2 hook is now also invalidated for changes in formals if there are no changes in roxygen comments (#214).
• All sub-patterns in the exclude: pattern of the spell check hook are now ordered alphabetically (#276).
• The deps-in-desc hook now points to the hook argument --allow_private_imports when the hook fails due to private imports (#254).
• roxygenize hook is now fully tested (#267).
• Hook scripts were relocated and R hooks now have a file extension (#280).
• Hook dependency updates are proposed by an automatic monthly pull request to lorenzwalthert/precommit. This does not affect users directly (#430).
• Updated GitHub Action workflows (#288).
• Use LF line endings in git config to ensure passing tests on Windows for R devel (#321).
• fixing typos (#289).
• fix R CMD Check (#284).

A big hand to all the contributors of this release:

\@adamblake, \@arbues6, \@b4D8, \@bart1, \@dhersz, \@joelnitta, \@jucor, \@lorenzwalthert, \@lukasfeick-sw, \@MarkMc1089, \@njtierney, \@pat-s, \@pwildenhain, and \@rossdrucker

For previous versions of NEWS.md with news bullet per patch release, see the latest NEWS.md before gathering.

precommit v0.1.3

This is mainly a CRAN maintenance release because of #201 and includes some bug fixes and no API changes.

A big hand to all the contributors of this release: \@fschoner, \@krzyslom, \@lorenzwalthert, \@maurolepore, \@pat-s, and \@zkamvar.

Minor Changes

• install_hooks in use_precommit() should now work as expected (#185).
• Switching from Travis to GitHub Actions (#191).
• use_precommit() now writes to the right .Rbuildignore when root is not the current working directory (#188, @krzyslom).
• Documentation improvements (#179, @maurolepore)
• precommit::uninstall_precommit() now correctly removes ^\\.pre-commit-config.yaml$from .Rbuildignore and does not show a prompt (#199).

precommit v0.1.2

Initial CRAN release. See https://lorenzwalthert.github.io/precommit/.

precommit v0.0.0.9049

• Roxygen hook cache only includes files that are part of the index and will hence be able to use the cache in cases it was previously invalidated without need (#171).
• styler hook should fail if styling any file fails (#174).

precommit v0.0.0.9048

• Don't allow legacy hooks by default, delete README hook from usethis informatively (#167).

precommit v0.0.0.9046

Major Changes

• use_precommit() gains new install_hooks = TRUE parameter. Now all hook environments defined in yaml config are by default installed in advance. (#163)

precommit v0.0.0.9044

Breaking Changes

• uninstall_precommit()'s scope argument value "global" was renamed to "user".

Major Changes

• By default, the spell check hook now exposes a regex pattern in the default .pre-commit-config-config.yaml for the spell check hook for easy manipulation. Also, additional patterns were excluded such as .sh (#157).

Minor Changes

• DESCRIPTION now links the pkgdown website in addition to the GitHub repo (#155).
• .Renviron, .Rrofile, .RData, .feather and .Rds is now also excluded from the spell checking hook.

precommit v0.0.0.9042

Breaking Changes

A major API review was conducted to make the package ready for a CRAN submission in #152:

• all functions have the argument path_root renamed to root.
• argument root now always defaults to here::here() for consistency.
• argument config_source was renamed to config_source in use_precommit_config() and use_precommit().
• use_precommit_config's argument force gains a default value for consistency with use_config().
• use_precommit_config's argument verbose now is in the same position as in use_config().

Additional breaking changes are:

• use env r-precommit instead of r-reticulate to avoid conflicts with other packages commonly installed in r-reticulate (#147).
• the hook spell-check does no longer take the hook argument ignore-files since this was inconsistent with the pre-commit framework. To exclude additional files, specify the exclude: key in your .pre-commit-config.yaml file. If you like to keep excluding the default files, make sure you include the default regex (#153).

precommit v0.0.0.9040

• roxygenize hook now only ran when git diff --cached contains roxygen comments (#151).
• conda is a suggested dependency now, so those who choose a different installation method have a more lightweight dependency graph (#136).
• Use more thoughtful order for hooks, between pkg and project (#142).

precommit v0.0.0.9031 up to v0.0.0.9038

Test release process.

precommit v0.0.0.9030

• auto-detect pre-commit executable when installed via pip for Linux (#120), macOS (#131).
• auto-detect pre-commit executable when installed via brew for macOS (#132).
• use_precommit() gains new argument config_source to copy an existing config file into the repo at initialization. The argument defaults to options('precommit.config_source') to make it easy for users to use their preferred hooks in every repo they initialize (#111).
• Create r-precommit env if not existent before installing into it (#114).
• Unify vignettes on available hooks and arguments (#109).
• Fail fast when repo is not a git repo (#111).
• default config file has spell-check activated (#118).
• also test on macOS (#120).
• template .pre-commit-config.yaml includes hook to check files have a EOF blank line (#126).
• spell-check hook now removes blank lines hand has no blank line at EOF (#127).
• depreciate path_pre_commit_exec() in favor of path_precommit_exec() and adapt internals to replace pre_commit with precommit (#130).
• more coherent error catching for system calls (#135).
• internal refactoring (#136).

precommit 0.0.0.9017

• BREAKING: If you used precommit \< 0.0.0.9017 (and if you choose a different installation strategy than precommit::install_precommit()), you can link your existing executable by setting the R optionprecommit.executable` to the path where you stored the pre-commit executable.

• Adding tools to work with hooks: install_precommit(), use_precommit(), uninstall_precommit(), open_config() and open_wordlist() using conda environments on all platforms.

• Make repo a fully R CMD CHECK compliant R package (includes moving hooks to inst/bin from bin.)

• renamed repo from pre-commit-hooks to precommit.

• added pkgdown website, restructured README.

precommit documentation built on July 2, 2022, 1:06 a.m.