kin | R Documentation |
Calculate the additive and dominance kinship matrix.
kin(gen)
gen |
a matrix for genotypes, coded as 1, 0, -1 for AA, Aa, aa. Each row represents an individual and each column represents a marker. |
a kinship matrix
## random population with 100 lines and 1000 markers gen <- matrix(rep(0,100*1000),100,1000) gen <- apply(gen,2,function(x){x <- sample(c(-1,0,1), 100, replace = TRUE)}) ## generate 100*100 kinship matrix k <- kin(gen)
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