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Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <arXiv:1607.02804v3>.
Package details |
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Author | Chao Deng, Timothy Daley and Andrew D. Smith |
Maintainer | Chao Deng <chaodeng@usc.edu> |
License | GPL-3 |
Version | 4.0.0 |
Package repository | View on CRAN |
Installation |
Install the latest version of this package by entering the following in R:
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