preseqR: Predicting Species Accumulation Curves

Estimating the number of species represented r or more times in a random sample.

Author
Chao Deng, Timothy Daley and Andrew D. Smith
Date of publication
2016-07-12 10:37:21
Maintainer
Chao Deng <chaodeng@usc.edu>
License
GPL-3
Version
2.0.1.1

View on CRAN

Man pages

FisherButterflyHist
Fisher's butterfly data
preseqR.interpolate.distinct
Interpolating a species accumulation curve
preseqR.interpolate.mincount
Interpolating the number of species represented at least r...
preseqR.nonreplace.sampling
Sampling without replacement
preseqR.package
An R package for estimating the number of species represented...
preseqR.pf.mincount
Estimating the expected number of species represented r or...
preseqR.pf.mincount.bootstrap
Estimating the number of species represented r or more times
preseqR.rfa.curve
Estimating the number of species represented in a random...
preseqR.rfa.estimate
Continued fraction calculation
preseqR.rfa.species.accum.curve
Predicting the number of species in a random sample
preseqR.simu.hist
Simulating a histogram
preseqR.ztnb.em
Fitting a zero-truncated negative binomial distribution
preseqR.ztnb.estimate
Estimating the number of new species through a ZTNB
preseqR.ztnb.mincount
Estimating the number of species represented at least r times...
preseqR.ztnb.species.accum.curve
Estimating the number of species through a ZTNB
ShakespeareWordHist
Shakespeare's word type frequencies

Files in this package

preseqR
preseqR/inst
preseqR/inst/CITATION
preseqR/src
preseqR/src/continued_fraction_c_interface.cpp
preseqR/src/continued_fraction.h
preseqR/src/continued_fraction.cpp
preseqR/NAMESPACE
preseqR/data
preseqR/data/ShakespeareWordHist.txt.gz
preseqR/data/FisherButterflyHist.txt.gz
preseqR/R
preseqR/R/simulation.R
preseqR/R/mincount.R
preseqR/R/continued_fraction.R
preseqR/R/ztnb.R
preseqR/README.md
preseqR/MD5
preseqR/DESCRIPTION
preseqR/man
preseqR/man/preseqR.rfa.estimate.Rd
preseqR/man/preseqR.ztnb.em.Rd
preseqR/man/preseqR.package.Rd
preseqR/man/preseqR.ztnb.species.accum.curve.Rd
preseqR/man/preseqR.interpolate.distinct.Rd
preseqR/man/preseqR.rfa.species.accum.curve.Rd
preseqR/man/FisherButterflyHist.Rd
preseqR/man/preseqR.interpolate.mincount.Rd
preseqR/man/preseqR.nonreplace.sampling.Rd
preseqR/man/preseqR.simu.hist.Rd
preseqR/man/preseqR.pf.mincount.Rd
preseqR/man/preseqR.pf.mincount.bootstrap.Rd
preseqR/man/preseqR.rfa.curve.Rd
preseqR/man/preseqR.ztnb.mincount.Rd
preseqR/man/ShakespeareWordHist.Rd
preseqR/man/preseqR.ztnb.estimate.Rd