Description Usage Arguments Value Author(s) Examples

This is the family of models that models a dynamic factor model on panel data. There are four covariance structures that can be modeled in different ways: `within_latent`

, `between_latent`

for the within-person and between-person latent (contemporaneous) models respectively, and `within_residual`

, `between_residual`

for the within-person and between-person residual models respectively. The `panelgvar`

wrapper function sets the `lambda`

to an identity matrix, all residual variances to zero, and models within-person and between-person latent (contemporaneous) models as GGMs. The `panelvar`

wrapper does the same but models contemporaneous relations as a variance-covariance matrix. Finally, the `panel_lvgvar`

wrapper automatically models all latent networks as GGMs.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | ```
dlvm1(data, vars, lambda, within_latent = c("cov", "chol",
"prec", "ggm"), within_residual = c("cov", "chol",
"prec", "ggm"), between_latent = c("cov", "chol",
"prec", "ggm"), between_residual = c("cov", "chol",
"prec", "ggm"), beta = "full", omega_zeta_within =
"full", delta_zeta_within = "full", kappa_zeta_within
= "full", sigma_zeta_within = "full",
lowertri_zeta_within = "full", omega_epsilon_within =
"empty", delta_epsilon_within = "empty",
kappa_epsilon_within = "empty", sigma_epsilon_within =
"empty", lowertri_epsilon_within = "empty",
omega_zeta_between = "full", delta_zeta_between =
"full", kappa_zeta_between = "full",
sigma_zeta_between = "full", lowertri_zeta_between =
"full", omega_epsilon_between = "empty",
delta_epsilon_between = "empty", kappa_epsilon_between
= "empty", sigma_epsilon_between = "empty",
lowertri_epsilon_between = "empty", nu, mu_eta,
identify = TRUE, identification = c("loadings",
"variance"), latents, groups, covs, means, nobs,
covtype = c("choose", "ML", "UB"), missing =
"listwise", equal = "none", baseline_saturated = TRUE,
estimator = "ML", optimizer, storedata = FALSE,
verbose = FALSE, sampleStats)
panelgvar(data, vars, ...)
panelvar(data, vars, ...)
panel_lvgvar(...)
``` |

`data` |
A data frame encoding the data used in the analysis. Can be missing if |

`vars` |
Required argument. Different from in other psychonetrics models, this must be a *matrix* with each row indicating a variable and each column indicating a measurement. The matrix must be filled with names of the variables in the dataset corresponding to variable i at wave j. NAs can be used to indicate missing waves. The rownames of this matrix will be used as variable names. |

`lambda` |
Required argument. A model matrix encoding the factor loading structure. Each row indicates an indicator and each column a latent. A 0 encodes a fixed to zero element, a 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix. |

`within_latent` |
The type of within-person latent contemporaneous model to be used. |

`within_residual` |
The type of within-person residual model to be used. |

`between_latent` |
The type of between-person latent model to be used. |

`between_residual` |
The type of between-person residual model to be used. |

`beta` |
A model matrix encoding the temporal relationships (transpose of temporal network). A 0 encodes a fixed to zero element, a 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix. Can also be |

`omega_zeta_within` |
Only used when |

`delta_zeta_within` |
Only used when |

`kappa_zeta_within` |
Only used when |

`sigma_zeta_within` |
Only used when |

`lowertri_zeta_within` |
Only used when |

`omega_epsilon_within` |
Only used when |

`delta_epsilon_within` |
Only used when |

`kappa_epsilon_within` |
Only used when |

`sigma_epsilon_within` |
Only used when |

`lowertri_epsilon_within` |
Only used when |

`omega_zeta_between` |
Only used when |

`delta_zeta_between` |
Only used when |

`kappa_zeta_between` |
Only used when |

`sigma_zeta_between` |
Only used when |

`lowertri_zeta_between` |
Only used when |

`omega_epsilon_between` |
Only used when |

`delta_epsilon_between` |
Only used when |

`kappa_epsilon_between` |
Only used when |

`sigma_epsilon_between` |
Only used when |

`lowertri_epsilon_between` |
Only used when |

`nu` |
Optional vector encoding the intercepts of the observed variables. Set elements to 0 to indicate fixed to zero constrains, 1 to indicate free intercepts, and higher integers to indicate equality constrains. For multiple groups, this argument can be a list or array with each element/column encoding such a vector. |

`mu_eta` |
Optional vector encoding the means of the latent variables. Set elements to 0 to indicate fixed to zero constrains, 1 to indicate free intercepts, and higher integers to indicate equality constrains. For multiple groups, this argument can be a list or array with each element/column encoding such a vector. |

`identify` |
Logical, should the model be automatically identified? |

`identification` |
Type of identification used. |

`latents` |
An optional character vector with names of the latent variables. |

`groups` |
An optional string indicating the name of the group variable in |

`covs` |
A sample varianceâ€“covariance matrix, or a list/array of such matrices for multiple groups. IMPORTANT NOTE: psychonetrics expects the maximum likelihood (ML) covariance matrix, which is NOT obtained from |

`means` |
A vector of sample means, or a list/matrix containing such vectors for multiple groups. |

`nobs` |
The number of observations used in |

`missing` |
How should missingness be handled in computing the sample covariances and number of observations when |

`equal` |
A character vector indicating which matrices should be constrained equal across groups. |

`baseline_saturated` |
A logical indicating if the baseline and saturated model should be included. Mostly used internally and NOT Recommended to be used manually. |

`estimator` |
The estimator to be used. Currently implemented are |

`optimizer` |
The optimizer to be used. Can be one of |

`storedata` |
Logical, should the raw data be stored? Needed for bootstrapping (see |

`verbose` |
Logical, should progress be printed to the console? |

`sampleStats` |
An optional sample statistics object. Mostly used internally. |

`covtype` |
If 'covs' is used, this is the type of covariance (maximum likelihood or unbiased) the input covariance matrix represents. Set to |

`...` |
Arguments sent to |

An object of the class psychonetrics (psychonetrics-class)

Sacha Epskamp

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | ```
library("dplyr")
# Smoke data cov matrix, based on LISS data panel https://www.dataarchive.lissdata.nl
smoke <- structure(c(47.2361758611759, 43.5366809116809, 41.0057465682466,
43.5366809116809, 57.9789886039886, 47.6992521367521,
41.0057465682466,
47.6992521367521, 53.0669434731935), .Dim = c(3L, 3L),
.Dimnames = list(
c("smoke2008", "smoke2009", "smoke2010"), c("smoke2008",
"smoke2009", "smoke2010")))
# Design matrix:
design <- matrix(rownames(smoke),1,3)
# Form model:
mod <- panelvar(vars = design,
covs = smoke, nobs = 352
)
# Run model:
mod <- mod %>% runmodel
# Evaluate fit:
mod %>% fit
``` |

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