Man pages for pulseTD
Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq Data and RNA-Seq Data
| correctionParams | Correct the parameters of the pulse model |
| estimateExpression | Estimated Expression |
| estimateParams | Estimated pulse model parameters! |
| getParams | Get pulseModel params |
| getParams-pulseTDmodel-method | getParams-method |
| getRates | Get rate values |
| getRates-pulseTDmodel-method | getRates-method |
| integrateA | integral function |
| integrateAC | integral function |
| plotRates | draw Method |
| plotRates-pulseTDmodel-method | plotRate-Method |
| predictExpression | predict Expression |
| predictExpression-pulseTDmodel-method | predictExpression-method |
| preExp | A gene list that stores predicted values of gene expression... |
| pulseModel | pulse function |
| pulseRates | A pulseTDModel Rdata file containing 100 gene expression... |
| pulseTDmodel-class | pulseTD-model |
| rpkmres | a list containing the expression values of exons and introns |
| rpkmSim | A simulated gene expressing Rdata file that contains... |
| splitA6Params | esitmate transcription parameters |
| splitB4Params | esitmate degradation parameters |
| splitC5Params | esitmate processing parameters |
