predictExpression-pulseTDmodel-method: predictExpression-method
In pulseTD: Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq Data and RNA-Seq Data
Description
Usage
Arguments
Value
Examples
Description
It is used to predict the expression of all gene at a given time,
including the expression of pre-mRNA (Precursor RNA) and the expression of total mRNA (Mature RNA).
End time and time interval can be arbitrarily defined
Usage
1
2
## S4 method for signature 'pulseTDmodel'
predictExpression(object, tg)
Arguments
object
a 'pulseTDmodel' that has been calculated with estimateParams
tg
A vector of points in time at which experimental data is collected, not allowed to be repeated
Value
Returns a list containing predicted values for each gene and a 0.95 confidence interval
Examples
1
2
3
4
5
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7
data('pulseRates', package='pulseTD')
pulseRates_correct = correctionParams(pulseRates)
TimeGrid = seq(0,180,15)
preExp = predictExpression(pulseRates_correct, tg=TimeGrid)
data('preExp', packages='pulseTD')
df = data.frame(preExp[['NM_001002011']])
head(df)
pulseTD documentation built on May 17, 2019, 5:03 p.m.
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Description Usage Arguments Value Examples
Description
It is used to predict the expression of all gene at a given time, including the expression of pre-mRNA (Precursor RNA) and the expression of total mRNA (Mature RNA). End time and time interval can be arbitrarily defined
Usage
1 2 | ## S4 method for signature 'pulseTDmodel'
predictExpression(object, tg)
|
Arguments
object |
a 'pulseTDmodel' that has been calculated with |
tg |
A vector of points in time at which experimental data is collected, not allowed to be repeated |
Value
Returns a list containing predicted values for each gene and a 0.95 confidence interval
Examples
1 2 3 4 5 6 7 | data('pulseRates', package='pulseTD')
pulseRates_correct = correctionParams(pulseRates)
TimeGrid = seq(0,180,15)
preExp = predictExpression(pulseRates_correct, tg=TimeGrid)
data('preExp', packages='pulseTD')
df = data.frame(preExp[['NM_001002011']])
head(df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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