Description Usage Arguments Value Examples
It is used to calculate the transcriptional dynamic rate of a gene. You can get the discrete or continuous rate values of the measurement time points. At the same time, it has a predictive function that provides rate values for any future time node or any range of time.
1 |
object |
a 'pulseTDmodel' that has been calculated with |
stage |
A character is one of three stages of transcriptional dynamics, transcription, processing and degradation. |
timevector |
A vector of time, which can be any time, defaults to NULL
|
genename |
a vector, default is NULL
|
A matrix, each row representing a gene, each column with a table to calculate the time node, and the value representing the rate of transcriptional dynamics.
1 2 3 4 5 6 7 8 9 10 11 12 | load(file.path(system.file(package="pulseTD"),"data","pulseRates.RData"))
pulseRates_correct <- correctionParams(pulseRates)
transcription = getRates(pulseRates_correct,'transcription')
degradation = getRates(pulseRates_correct, 'degradation')
processing = getRates(pulseRates_correct, 'processing')
head(transcription)
head(degradation)
head(processing)
trans = getRates(pulseRates_correct, 'transcription', timevector=c(0,1,2,3))
head(transcription)
trans=getRates(pulseRates_correct, 'transcription', timevector=c(2,3),genename=c(2,3))
head(transcription)
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