hwd: Deviation from Hardy-Weinberg equilibrium
In purgeR: Inbreeding-Purging Estimation in Pedigreed Populations
hwd R Documentation
Deviation from Hardy-Weinberg equilibrium
Description
Computes the deviation from Hardy-Weinberg equilibrium following Caballero and Toro (2000).
Usage
hwd(ped, reference = NULL)
Arguments
ped
A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns.
reference
A string naming a column indicating whether individuals belong to the reference population or not. Column must be boolean or coercible to boolean type.
Value
A numeric value indicating the deviation from Hardy-Weinberg equilibrium.
References
Caballero A, Toro M. 2000. Interrelations between effective population size and other pedigree tools for the management of conserved populations. Genet. Res. 75: 331-343.
See Also
pop_Ne
purgeR documentation built on Aug. 16, 2023, 9:07 a.m.
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| hwd | R Documentation |
Deviation from Hardy-Weinberg equilibrium
Description
Computes the deviation from Hardy-Weinberg equilibrium following Caballero and Toro (2000).
Usage
hwd(ped, reference = NULL)
Arguments
ped |
A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns. |
reference |
A string naming a column indicating whether individuals belong to the reference population or not. Column must be boolean or coercible to boolean type. |
Value
A numeric value indicating the deviation from Hardy-Weinberg equilibrium.
References
Caballero A, Toro M. 2000. Interrelations between effective population size and other pedigree tools for the management of conserved populations. Genet. Res. 75: 331-343.
See Also
pop_Ne
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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