Nothing
#####################################################################
#
# mqmprepare.R
#
# Copyright (c) 2009-2010, Danny Arends
#
# Modified by Pjotr Prins and Karl Broman
#
#
# first written Februari 2009
# last modified April 2010
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License,
# version 3, as published by the Free Software Foundation.
#
# This program is distributed in the hope that it will be useful,
# but without any warranty; without even the implied warranty of
# merchantability or fitness for a particular purpose. See the GNU
# General Public License, version 3, for more details.
#
# A copy of the GNU General Public License, version 3, is available
# at http://www.r-project.org/Licenses/GPL-3
#
# Part of the R/qtl package
# Contains: mqmfind.marker
#
#
#####################################################################
mqmfind.marker <- function(cross,mqmscan=NULL,perm=NULL,alpha=0.05,verbose=FALSE){
thesum <- summary(mqmscan[,1:3],alpha=alpha,perms=perm,pvalues=FALSE)
chr <- thesum$'chr'
pos <- thesum$'pos'
if(verbose) cat("INFO: Found",length(chr),"markers with alpha <",alpha,".\n")
ret <- NULL
for(i in 1:length(chr)){
ret <- rbind(ret,cbind(find.marker(cross,chr=chr[i],pos=pos[i]),as.integer(chr[i]),as.double(pos[i])))
}
colnames(ret) <- c("marker","chr","pos (cM)")
ret
}
# end of mqmprepare.R
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.