Files in qtl2pleio
Testing Pleiotropy in Multiparental Populations

MD5
NEWS.md
LICENSE
DESCRIPTION
README.md
NAMESPACE
inst/CITATION
inst/doc/bootstrap-cluster.Rmd inst/doc/recla-analysis.Rmd
inst/doc/recla-analysis.html
inst/doc/bootstrap-cluster.html
inst/doc/d-variate-analysis.html
inst/doc/bootstrap-cluster.R inst/doc/recla-analysis.R inst/doc/d-variate-analysis.R inst/doc/d-variate-analysis.Rmd vignettes/bootstrap-cluster.Rmd vignettes/recla-analysis.Rmd
vignettes/qtl2pleio.bib
vignettes/d-variate-analysis.Rmd R/calc_profile_lods.R R/rcpp_calc_Bhat.R R/calc_lrt_tib.R R/rcpp_log_dmvnorm2.R R/sim1.R R/utils.R R/plot_pvl.R R/RcppExports.R R/boot_pvl.R R/find_pleio_peak_tib.R R/catch-routine-registration.R R/fit1_pvl.R R/calc_covs.R R/utils-pipe.R R/prep_mytab.R R/get_effects.R R/scan_pvl.R R/calc_Bhat.R R/calc_sqrt_mat.R R/qtl2pleio-package.r R/calc_Sigma.R
src/matrix.h
src/test-example.cpp
src/RcppExports.cpp
src/rcppeigen.cpp
src/test-runner.cpp
src/rcpp_ols.cpp
src/eigen_sqrt.cpp
src/matrix.cpp
man/calc_sqrt_mat.Rd man/check_missingness.Rd man/calc_profile_lods.Rd man/boot_pvl.Rd man/sim1.Rd man/calc_invsqrt_mat.Rd man/scan_pvl.Rd man/get_effects.Rd man/make_id2keep.Rd man/prep_X_list.Rd man/add_pmap.Rd man/rcpp_calc_Bhat.Rd man/calc_Sigma.Rd man/rcpp_calc_Bhat2.Rd man/check_identical.Rd man/subset_input.Rd man/prep_mytab.Rd man/fit1_pvl.Rd man/calc_Bhat.Rd man/qtl2pleio.Rd man/pipe.Rd man/subset_kinship.Rd man/rcpp_log_dmvnorm2.Rd man/plot_pvl.Rd man/calc_covs.Rd man/calc_lrt_tib.Rd man/find_pleio_peak_tib.Rd
man/figures/README-1d-lod-plots-1.png
man/figures/README-profile-plot-1.png
build/vignette.rds
tests/testthat.R tests/testthat/test-calc_Bhat.R tests/testthat/test-sim1.R tests/testthat/test-cpp.R tests/testthat/test-rcpp_calc_Bhat.R tests/testthat/test-prep_mytab.R tests/testthat/test-boot_pvl.R tests/testthat/test-calc_lrt_tib.R tests/testthat/test-find_pleio_peak_tib.R tests/testthat/test-make_id2keep.R tests/testthat/test-subset_input.R tests/testthat/test-rcpp_calc_Bhat2.R tests/testthat/test-scan_pvl.R tests/testthat/test-drop_depcols.R tests/testthat/test-calc_covs.R tests/testthat/test-rcpp_log_dmvnorm2.R
qtl2pleio documentation built on Nov. 5, 2019, 5:06 p.m.