Nothing
convert_to_scan1_output
to convert multivariate, one-QTL lods to output format of qtl2::scan1
, for use in qtl2::bayes_int
.scan_pvl
and boot_pvl
to reduce duplicated codeparallel
.cores
value to parallelly::availableCores()
for compatibility with job schedulers.parallel
package use with furrr
. This led to removal of the argument
n_cores
from both boot_pvl
and scan_pvl
. A user may now use future::plan
to
run in parallel.boot_pvl
, changing nboot_per_job
to nboot
.scan_pvl_clean
to be called in both scan_pvl
and boot_pvl
. This change shouldn't affect most users' experiences.calc_lrt_tib
function to accommodate d-dimensional, d-variate scansI shortened title per CRAN recommendation
I added \value tags to document functions' outputs
Per CRAN submission feedback, I spelled out QTL in DESCRIPTION file and upon first use in vignettes.
Added citations with references to vignettes.
plot_pvl
to not indicate univariate peak positions. Re-created profile LOD plots for vignettes and README without indicating univariate peak positions.
Added line type arguments to plot_pvl
.
boot_pvl
and scan_pvl
boot_pvl
boot_pvl
and scan_pvl
scan_pvl
scan_pvl
to a tibble boot_n
function for use in bootstrap analyses calc_covs
. Note that we still don't use genetic data when calling calc_covs
. calc_loglik_bvlmm
scan_pvl
to allow for more than two phenotypes. Now output is a dataframe.NEWS.md
file to track changes to the package.Any scripts or data that you put into this service are public.
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