Man pages for qtlpoly
Random-Effect Multiple QTL Mapping in Autopolyploids
| B2721 | Autotetraploid potato dataset |
| breeding_values | Prediction of QTL-based breeding values from REMIM model |
| feim | Fixed-effect interval mapping (FEIM) |
| fit_model | Fits multiple QTL models |
| hexafake | Simulated autohexaploid dataset. |
| maps4x | Autotetraploid potato map |
| maps6x | Simulated autohexaploid map |
| mmer_adapted | Adapt to sommer MNR core function |
| modify_qtl | Modify QTL model |
| null_model | Null model |
| optimize_qtl | Model optimization |
| permutations | Fixed-effect interval mapping (FEIM) model permutations |
| pheno4x | Autotetraploid potato phenotypes |
| pheno6x | Simulated phenotypes |
| plot_profile | Logarithm of _P_-value (LOP) profile plots |
| plot_qtl | QTL heritability and significance plot |
| plot_sint | QTLs with respective support interval plots |
| profile_qtl | QTL profiling |
| qtl_effects | QTL allele effect estimation |
| read_data | Read genotypic and phenotypic data |
| remim | Random-effect multiple interval mapping (REMIM) |
| search_qtl | QTL forward search |
| simulate_qtl | Simulations of multiple QTL |
