plot_metrics: Plot metrics generated from the "calculate" family of quicR...

In quicR: RT-QuIC Data Formatting and Analysis

Plot metrics generated from the "calculate" family of quicR functions.

Description

Generates a faceted figure of boxplots.

Usage

plot_metrics(
  data,
  sample_col = "Sample IDs",
  fill = "Dilutions",
  dilution_bool = TRUE,
  nrow = 2,
  ncol = 2
)

Arguments

data	A dataframe containing the calculated metrics from the "calculate" family of quicR functions.
sample_col	The name of the column containing the sample IDs.
fill	The column containing the fill aesthetic. Usually the dilutions column.
dilution_bool	Logical; should dilution factors be included in the plot?
nrow	Integer; number of rows to output in the plot.
ncol	Integer; number of columns to output in the plot.

Value

A ggplot object

Examples

# This test takes >5 sec

file <- system.file(
  "extdata/input_files",
  file = "test4.xlsx",
  package = "quicR"
)

data <- quicR::get_real(file)[[1]] |>
  quicR::normalize_RFU()

meta <- quicR::organize_tables(file) |>
  quicR::convert_tables()

calculate_metrics(data, meta) |>
  plot_metrics()

quicR documentation built on April 3, 2025, 11:20 p.m.