get_SIS_info: Gather information for the NOAA Species Information System...

In r4ss: R Code for Stock Synthesis

Gather information for the NOAA Species Information System (SIS)

Description

Processes model results contained in the list created by SS_output() in a format that is more convenient for submission to SIS. Currently the results are returned invisibly as a list of two tables and written to a CSV file from which results could be copied into SIS. In the future some more direct link could be explored to avoid the manual copy step.

Usage

get_SIS_info(
  model,
  dir = NULL,
  writecsv = TRUE,
  stock = "StockName",
  final_year = 2019,
  data_year = NULL,
  sciencecenter = "NWFSC",
  Mgt_Council = "NA"
)

Arguments

model	Output from SS_output
dir	Directory where the file will be written
writecsv	Write results to a CSV file (where the name will have the format "[stock]_2019_SIS_info.csv" where stock is an additional input
stock	String to prepend id info to filename for CSV file
final_year	Year of assessment and reference points (typically will be model[["endyr"]] + 1)
data_year	Last year of of timeseries data
sciencecenter	Origin of assessment report
Mgt_Council	Council jurisdiction. Currently the only option outside of the default is Gulf of Mexico ("GM")

Author(s)

Ian G. Taylor, Andi Stephens, LaTreese S. Denson

See Also

SS_output()

Examples

## Not run: 
# directory with the model output
mydir <- file.path(path.package("r4ss"), "extdata/simple_3.30.13")
# read the model output
model <- SS_output(dir = mydir)
# run get_SIS_info:
info <- get_SIS_info(model, stock = "SimpleExample")

## End(Not run)

r4ss documentation built on May 28, 2022, 1:11 a.m.