Files in r4ss
R Code for Stock Synthesis
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/SStableComparisons.R
R/SSplotRetroDevs.R
R/SS_RunJitter.R
R/SS_readstarter.R
R/SS_readforecast.R
R/make_multifig_sexratio.R
R/SSplotYield.R
R/get_ncol.R
R/SS_readctl_3.24.R
R/SSplotMCMC_ExtraSelex.R
R/SS_makeHTMLdiagnostictable.R
R/SSplotMovementRates.R
R/SS_writedat_3.30.R
R/plotCI.R
R/SSMethod.Cond.TA1.8.R
R/SS_writestarter.R
R/PinerPlot.R
R/SS_writewtatage.R
R/SS_readpar_3.24.R
R/r4ss-package.R
R/SS_writectl.R
R/SS_decision_table_stuff.R
R/SS_readctl_3.30.R
R/RebuildPlot.R
R/SS_readwtatage.R
R/SS_readdat.R
R/SSplotCatch.R
R/SS_fitbiasramp.R
R/SS_profile.R
R/SS_writedat.R
R/stackpoly.R
R/SSplotSelex.R
R/SS_output.R
R/SS_doRetro.R
R/r4ss_logo.R
R/SS_varadjust.R
R/SSMethod.TA1.8.R
R/SS_writectl_3.30.R
R/SS_writedat_3.24.R
R/SSgetoutput.R
R/SS_splitdat.R
R/SS_write.R
R/mcmc.out.R
R/SS_readpar_3.30.R
R/SSunavailableSpawningOutput.R
R/check_model.R
R/SS_readdat_2.00.R
R/selShapes.R
R/SSbootstrap.R
R/SS_parlines.R
R/SSplotProfile.R
R/getADMBHessian.R
R/populate_multiple_folders.R
R/SSplotIndices.R
R/bubble3.R
R/file_increment.R
R/SSexecutivesummary.r
R/SSplotTimeseries.R
R/SS_readdat_3.24.R
R/SSmohnsrho.R
R/TSCplot.R
R/SSplotNumbers.R
R/mountains.R
R/SSplotDynamicB0.R
R/SSplotCohortCatch.R
R/SSplotDiscard.R
R/SS_readctl.R
R/SSplotRetroRecruits.R
R/SSplotComps.R
R/SSplotSexRatio.R
R/SS_html.R
R/SSplotMnwt.R
R/SSplotSPR.R
R/SS_writepar_3.30.R
R/SS_writectl_3.24.R
R/SSplotMovementMap.R
R/check_inputlist.R
R/copy_SS_inputs.R
R/run_SS_models.R
R/SSplotData.R
R/SS_writeforecast.R
R/SSplotSummaryF.R
R/SS_read_summary.R
R/write_fwf4.r
R/SS_readdat_3.00.R
R/SSplotAgeMatrix.R
R/SSmakeMmatrix.R
R/mcmc.nuisance.R
R/SSplotRecdevs.R
R/SSplotComparisons.R
R/SSplotPars.R
R/SSbiologytables.R
R/SS_changepars.R
R/make_multifig.R
R/read.admbFit.R
R/NegLogInt_Fn.R
R/SS_tune_comps.R
R/SS_writepar_3.24.R
R/helper_fxns.R
R/SS_Sensi_plot.R
R/SS_recdevs.R
R/SSplotRecdist.R
R/SS_readdat_3.30.R
R/SSplotSpawnrecruit.R
R/SS_ForeCatch.R
R/SSplotBiology.R
R/SSplotTags.R
R/SSgetMCMC.R
R/SSsummarize.R
R/SS_read.R
R/get_comments.r
R/SS_plots.R
R/get_SIS_info.R
inst/CITATION
inst/WORDLIST
inst/extdata/simple_3.30.13/simple_data.ss
inst/extdata/simple_3.30.13/starter.ss
inst/extdata/simple_3.30.13/simple_control.ss
inst/extdata/simple_3.30.13/forecast.ss
man/read.admbFit.Rd
man/SS_writepar_3.30.Rd
man/SSgetMCMC.Rd
man/mcmc.nuisance.Rd
man/SSsummarize.Rd
man/PinerPlot.Rd
man/SSplotComps.Rd
man/SSMethod.Cond.TA1.8.Rd
man/SSplotSPR.Rd
man/write_fwf4.Rd
man/SS_readwtatage.Rd
man/SSplotCatch.Rd
man/SS_html.Rd
man/SSplotData.Rd
man/SSplotComparisons.Rd
man/SSplotRetroRecruits.Rd
man/add_legend.Rd
man/SS_plots.Rd
man/SS_makeHTMLdiagnostictable.Rd
man/SS_output.Rd
man/SSplotDynamicB0.Rd
man/SSplotMnwt.Rd
man/SSexecutivesummary.Rd
man/SSbootstrap.Rd
man/SS_writectl_3.30.Rd
man/get_tv_parlabs.Rd
man/stackpoly.Rd
man/SS_recdevs.Rd
man/SSbiologytables.Rd
man/SS_RunJitter.Rd
man/SSplotDiscard.Rd
man/SS_writedat.Rd
man/SSplotBiology.Rd
man/run_SS_models.Rd
man/SS_writeforecast.Rd
man/SS_writectl_3.24.Rd
man/SS_readdat_3.24.Rd
man/SS_writectl.Rd
man/SSplotPars.Rd
man/TSCplot.Rd
man/SSmohnsrho.Rd
man/SSplotMovementMap.Rd
man/SS_readstarter.Rd
man/SSplotMCMC_ExtraSelex.Rd
man/SS_varadjust.Rd
man/SS_splitdat.Rd
man/is.wholenumber.Rd
man/get_tuning_table.Rd
man/make_multifig_sexratio.Rd
man/r4ss_logo.Rd
man/SSdiagsTime2Year.Rd
man/SS_readdat_3.30.Rd
man/SSplotRecdevs.Rd
man/selShapes.Rd
man/SS_writedat_3.24.Rd
man/SSgetoutput.Rd
man/copy_SS_inputs.Rd
man/translate_3.30_to_3.24_Q_setup.Rd
man/SS_readforecast.Rd
man/SStableComparisons.Rd
man/SS_read_summary.Rd
man/get_comments.Rd
man/SS_readpar_3.24.Rd
man/SS_ForeCatch.Rd
man/SS_writepar_3.24.Rd
man/SS_Sensi_plot.Rd
man/get_dat_new_name.Rd
man/SSplotSummaryF.Rd
man/SS_profile.Rd
man/SS_readdat.Rd
man/SSplotCohortCatch.Rd
man/SS_read.Rd
man/SSplotNumbers.Rd
man/SS_decision_table_stuff.Rd
man/SSplotMovementRates.Rd
man/SS_readctl_3.24.Rd
man/SS_writewtatage.Rd
man/SS_parlines.Rd
man/sspar.Rd
man/SS_readpar_3.30.Rd
man/SS_writestarter.Rd
man/SS_write.Rd
man/NegLogInt_Fn.Rd
man/save_png.Rd
man/file_increment.Rd
man/SS_readdat_3.00.Rd
man/get_SIS_info.Rd
man/r4ss-package.Rd
man/mcmc.out.Rd
man/SSplotTags.Rd
man/SS_readctl.Rd
man/SSplotRecdist.Rd
man/mountains.Rd
man/SSplotSelex.Rd
man/plotCI.Rd
man/SSplotTimeseries.Rd
man/SSplotIndices.Rd
man/check_model.Rd
man/SS_readctl_3.30.Rd
man/SSplotYield.Rd
man/make_multifig.Rd
man/SSplotAgeMatrix.Rd
man/SSmakeMmatrix.Rd
man/DoProjectPlots.Rd
man/rich.colors.short.Rd
man/SSplotSexRatio.Rd
man/SS_readdat_2.00.Rd
man/check_inputlist.Rd
man/populate_multiple_folders.Rd
man/SSunavailableSpawningOutput.Rd
man/translate_3.30_to_3.24_var_adjust.Rd
man/getADMBHessian.Rd
man/SS_fitbiasramp.Rd
man/SS_doRetro.Rd
man/SS_writedat_3.30.Rd
man/bubble3.Rd
man/SS_tune_comps.Rd
man/SS_changepars.Rd
man/SSMethod.TA1.8.Rd
man/SSplotSpawnrecruit.Rd
man/get_last_phase.Rd
man/SSplotProfile.Rd
