SSplotRecdevs: Plot recruitment deviations

In r4ss: R Code for Stock Synthesis

Plot recruitment deviations

Description

Plot recruitment deviations and associated quantities including derived measures related to bias adjustment.

Usage

SSplotRecdevs(
  replist,
  subplots = 1:3,
  plot = TRUE,
  print = FALSE,
  add = FALSE,
  uncertainty = TRUE,
  minyr = -Inf,
  maxyr = Inf,
  forecastplot = FALSE,
  col1 = "black",
  col2 = "blue",
  col3 = "green3",
  col4 = "red",
  legendloc = "topleft",
  labels = c("Year", "Asymptotic standard error estimate", "Log recruitment deviation",
    "Bias adjustment fraction, 1 - stddev^2 / sigmaR^2"),
  pwidth = 6.5,
  pheight = 5,
  punits = "in",
  res = 300,
  ptsize = 10,
  cex.main = 1,
  plotdir = "default",
  verbose = TRUE
)

Arguments

replist	A list object created by SS_output().
subplots	vector controlling which subplots to create
plot	plot to active plot device?
print	print to PNG files?
add	add to existing plot (not yet implemented)
uncertainty	include plots showing uncertainty?
minyr	optional input for minimum year to show in plots
maxyr	optional input for maximum year to show in plots
forecastplot	include points from forecast years?
col1	first color used
col2	second color used
col3	third color used
col4	fourth color used
legendloc	location of legend. see ?legend for more info
labels	vector of labels for plots (titles and axis labels)
pwidth	width of plot
pheight	height of plot
punits	units for PNG file
res	Resolution of plots printed to files. The default is res = 300.
ptsize	point size for PNG file
cex.main	character expansion for plot titles
plotdir	directory where PNG files will be written. by default it will be the directory where the model was run.
verbose	report progress to R GUI?

Author(s)

Ian Taylor, Ian Stewart

See Also

SS_plots(), SS_fitbiasramp()

r4ss documentation built on May 28, 2022, 1:11 a.m.