SSbiologytables: A function to create a table of biology for assessment...

In r4ss: R Code for Stock Synthesis

A function to create a table of biology for assessment reporting: length, weight, % mature, fecundity, and selectivity

Description

Takes the object created by SS_output to create table for reporting for West Coast groundfish. Works with Stock Synthesis versions 3.30.12 and later.

Usage

SSbiologytables(
  replist = NULL,
  printfolder = "tables",
  dir = "default",
  fleetnames = "default",
  selexyr = "default"
)

Arguments

replist	A list object created by SS_output().
printfolder	The sub-directory under 'dir' (see below) in which the PNG files will be located. The default sub-directory is "plots". The directory will be created if it doesn not exist. If 'printfolder' is set to "", it is ignored and the PNG files will be located in the directory specified by 'dir'.
dir	The directory in which a PDF file (if requested) will be created and within which the printfolder sub-directory (see above) will be created if png=TRUE. By default it will be the same directory that the report file was read from by the SS_output function. Alternatives to the default can be either relative (to the working directory) or absolute paths. The function will attempt to create the directory it does not exist, but it does not do so recursively.
fleetnames	Either the string "default", or a vector of characters strings to use for each fleet name. Default="default".
selexyr	The year to summarize selectivity, the default is the final model yr strings to use for each fleet name. Default="default".

Value

A csv files containing biology and selectivity tables

Author(s)

Chantel Wetzel

r4ss documentation built on May 28, 2022, 1:11 a.m.