SSbiologytables: A function to create a table of biology for assessment...

Description Usage Arguments Value Author(s)

Description

Takes the object created by SS_output to create table for reporting for West Coast groundfish. Works with Stock Synthesis versions 3.30.12 and later.

Usage

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SSbiologytables(replist = NULL, printfolder = "tables",
  dir = "default", fleetnames = "default", selexyr = "default")

Arguments

replist

List created by SS_output backslashes (or forwardslashes) and quotes necessary.

printfolder

The sub-directory under 'dir' (see below) in which the PNG files will be located. The default sub-directory is "plots". The directory will be created if it doesn\'t exist. If 'printfolder' is set to "", it is ignored and the PNG files will be located in the directory specified by 'dir'.

dir

The directory in which a PDF file (if requested) will be created and within which the printfolder sub-directory (see above) will be created if png=TRUE. By default it will be the same directory that the report file was read from by the SS_output function. Alternatives to the default can be either relative (to the working directory) or absolute paths. The function will attempt to create the directory it doesn't exist, but it does not do so recursively.

fleetnames

Either the string "default", or a vector of characters strings to use for each fleet name. Default="default".

selexyr

The year to summarize selectivity, the default is the final model yr strings to use for each fleet name. Default="default".

Value

A csv files containing biology and selectivity tables

Author(s)

Chantel Wetzel


r4ss documentation built on Oct. 30, 2019, 11:25 a.m.