SSplotSummaryF: Plot the summary F (or harvest rate).

In r4ss: R Code for Stock Synthesis

Plot the summary F (or harvest rate).

Description

Plots the summary F (or harvest rate) as set up in the starter file Needs a lot of work to be generalized

Usage

SSplotSummaryF(
  replist,
  yrs = "all",
  Ftgt = NA,
  ylab = "Summary Fishing Mortality",
  plot = TRUE,
  print = FALSE,
  plotdir = "default",
  verbose = TRUE,
  uncertainty = TRUE,
  add = FALSE,
  pwidth = 6.5,
  pheight = 5,
  punits = "in",
  res = 300,
  ptsize = 10,
  mar = NULL
)

Arguments

replist	A list object created by SS_output().
yrs	Which years to include.
Ftgt	Target F where horizontal line is shown.
ylab	Y-axis label.
plot	Plot to active plot device?
print	Print to PNG files?
plotdir	Directory where PNG files will be written. By default it will be the directory where the model was run.
verbose	Verbose output to R console?
uncertainty	Show 95% uncertainty intervals around point estimates?
add	add to existing plot
pwidth	Default width of plots printed to files in units of punits. The default is pwidth=6.5.
pheight	Height of plots printed to png files in units of punits. Default is designed to allow two plots per page, with pheight_tall used for plots that work best with a taller format and a single plot per page.
punits	Units for pwidth and pheight. Can be "px" (pixels), "in" (inches), "cm" (centimeters), or "mm" (millimeters). The default is punits="in".
res	Resolution of plots printed to files. The default is res = 300.
ptsize	Point size for plotted text in plots printed to files (see help("png") in R for details).
mar	Either NULL to allow the default (which depends on whether the main title is included or not) or a numerical vector of the form c(bottom, left, top, right) which gives the number of lines of margin to be specified on the four sides of the plot, which is passed to par().

Author(s)

Allan Hicks

See Also

SSplotTimeseries()

r4ss documentation built on May 28, 2022, 1:11 a.m.