SSsummarize: Summarize the output from multiple Stock Synthesis models.

In r4ss: R Code for Stock Synthesis

Summarize the output from multiple Stock Synthesis models.

Description

Summarize various quantities from the model output collected by SSgetoutput() and return them in a list of tables and vectors.

Usage

SSsummarize(
  biglist,
  sizeselfactor = "Lsel",
  ageselfactor = "Asel",
  selfleet = NULL,
  selyr = "startyr",
  selgender = 1,
  SpawnOutputUnits = NULL,
  lowerCI = 0.025,
  upperCI = 0.975,
  verbose = TRUE
)

Arguments

biglist	A list of lists, one for each model. The individual lists can be created by SS_output() or the list of lists can be created by SSgetoutput() (which iteratively calls SS_output()).
sizeselfactor	A string or vector of strings indicating which elements of the selectivity at length output to summarize. Default=c("Lsel").
ageselfactor	A string or vector of strings indicating which elements of the selectivity at age output to summarize. Default=c("Asel").
selfleet	Vector of fleets for which selectivity will be summarized. NULL=all fleets. Default=NULL.
selyr	String or vector of years for which selectivity will be summarized. NOTE: NOT CURRENTLY WORKING. Options: NULL=all years, "startyr" = first year.
selgender	Vector of genders (1 and/or 2) for which selectivity will be summarized. NULL=all genders. Default=NULL.
SpawnOutputUnits	Optional single value or vector of "biomass" or "numbers" giving units of spawning for each model.
lowerCI	Quantile for lower bound on calculated intervals. Default = 0.025 for 95% intervals.
upperCI	Quantile for upper bound on calculated intervals. Default = 0.975 for 95% intervals.
verbose	A logical value specifying if output should be printed to the screen.

Author(s)

Ian Taylor

See Also

SSgetoutput()

r4ss documentation built on May 28, 2022, 1:11 a.m.