SSsummarize: Summarize the output from multiple Stock Synthesis models.

Description Usage Arguments Author(s) See Also

View source: R/SSsummarize.R

Description

Summarize various quantities from the model output collected by SSgetoutput and return them in a list of tables and vectors.

Usage

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SSsummarize(biglist, sizeselfactor = "Lsel", ageselfactor = "Asel",
  selfleet = NULL, selyr = "startyr", selgender = 1,
  SpawnOutputUnits = NULL, lowerCI = 0.025, upperCI = 0.975)

Arguments

biglist

A list of lists created by SSgetoutput.

sizeselfactor

A string or vector of strings indicating which elements of the selectivity at length output to summarize. Default=c("Lsel").

ageselfactor

A string or vector of strings indicating which elements of the selectivity at age output to summarize. Default=c("Asel").

selfleet

Vector of fleets for which selectivity will be summarized. NULL=all fleets. Default=NULL.

selyr

String or vector of years for which selectivity will be summarized. NOTE: NOT CURRENTLY WORKING. Options: NULL=all years, "startyr" = first year.

selgender

Vector of genders (1 and/or 2) for which selectivity will be summarized. NULL=all genders. Default=NULL.

SpawnOutputUnits

Optional single value or vector of "biomass" or "numbers" giving units of spawning for each model.

lowerCI

Quantile for lower bound on calculated intervals. Default = 0.025 for 95% intervals.

upperCI

Quantile for upper bound on calculated intervals. Default = 0.975 for 95% intervals.

Author(s)

Ian Taylor

See Also

SSgetoutput


r4ss documentation built on May 29, 2017, 2:24 p.m.