SSplotMnwt: Plot mean weight data and fits.

In r4ss: R Code for Stock Synthesis

Plot mean weight data and fits.

Description

Plot mean weight data and fits from Stock Synthesis output. Intervals are based on T-distributions as specified in model.

Usage

SSplotMnwt(
  replist,
  subplots = 1:2,
  ymax = NULL,
  plot = TRUE,
  print = FALSE,
  fleets = "all",
  fleetnames = "default",
  datplot = FALSE,
  labels = c("Year", "discard", "retained catch", "whole catch",
    "Mean individual body weight (kg)", "Mean weight in", "for"),
  col1 = "blue",
  col2 = "black",
  pwidth = 6.5,
  pheight = 5,
  punits = "in",
  res = 300,
  ptsize = 10,
  cex.main = 1,
  plotdir = "default",
  verbose = TRUE
)

Arguments

replist	A list object created by SS_output().
subplots	Vector of which plots to make (1 = data only, 2 = with fit). If plotdat = FALSE then subplot 1 is not created, regardless of choice of subplots.
ymax	Optional input to override default ymax value.
plot	plot to active plot device?
print	print to PNG files?
fleets	optional vector to subset fleets for which plots will be made
fleetnames	optional replacement for fleenames used in data file
datplot	Make data-only plot of discards? This can override the choice of subplots.
labels	vector of labels for plots (titles and axis labels)
col1	first color to use in plot (for expected values)
col2	second color to use in plot (for observations and intervals)
pwidth	width of plot
pheight	height of plot
punits	units for PNG file
res	Resolution of plots printed to files. The default is res = 300.
ptsize	point size for PNG file
cex.main	character expansion for plot titles
plotdir	directory where PNG files will be written. by default it will be the directory where the model was run.
verbose	report progress to R GUI?

Author(s)

Ian Taylor, Ian Stewart

See Also

SS_plots(), SS_output()

r4ss documentation built on May 28, 2022, 1:11 a.m.