SS_splitdat | R Documentation |
A function to split apart bootstrap data files created in data.ss_new. To
get bootstraps, the input "N bootstrap file to produce" in starter.ss needs
to be 3 or greater. The function can either create a file for just the
input data (if inputs=TRUE
), a file for just the MLE values
(if MLE = TRUE
), or separate files for each of the bootstraps
(if inputs=FALSE
and MLE=FALSE
).
SS_splitdat( inpath = "working_directory", outpath = "working_directory", inname = "data.ss_new", outpattern = "BootData", number = FALSE, verbose = TRUE, fillblank = TRUE, MLE = TRUE, inputs = FALSE, notes = "" )
inpath |
Directory containing the input file. By default the working directory given by getwd() is used. Default="working_directory". |
outpath |
Directory into which the output file will be written. Default="working_directory". |
inname |
File name of input data file to be split. Default="Data.SS_New". |
outpattern |
File name of output data file. Default="BootData". |
number |
Append bootstrap number to the file name chosen in
|
verbose |
Provide richer command line info of function progress? Default=TRUE. |
fillblank |
Replace blank lines with "#". Helps with running on linux. Default=TRUE. |
MLE |
Grab the maximum likelihood values from the second block in Data.SS_New (instead of bootstrap values or copies of inputs)? Default=TRUE. |
inputs |
Grab the copy of the input values values from the first block in Data.SS_New (instead of MLE or bootstrap values)? Default=F. |
notes |
Notes to the top of the new file (comment indicator "#C" will be added). Default="". |
Ian Taylor
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