SStableComparisons: make table comparing quantities across models

In r4ss: R Code for Stock Synthesis

make table comparing quantities across models

Description

Creates a table comparing key quantities from multiple models, which is a reduction of the full information in various parts of the list created using the SSsummarize function.

Usage

SStableComparisons(
  summaryoutput,
  models = "all",
  likenames = c("TOTAL", "Survey", "Length_comp", "Age_comp", "priors", "Size_at_age"),
  names = c("Recr_Virgin", "R0", "steep", "NatM", "L_at_Amax", "VonBert_K", "SSB_Virg",
    "Bratio_2021", "SPRratio_2020"),
  digits = NULL,
  modelnames = "default",
  csv = FALSE,
  csvdir = "workingdirectory",
  csvfile = "parameter_comparison_table.csv",
  verbose = TRUE,
  mcmc = FALSE
)

Arguments

summaryoutput	list created by SSsummarize
models	optional subset of the models described in summaryoutput. Either "all" or a vector of numbers indicating columns in summary tables.
likenames	Labels for likelihood values to include, should match substring of labels in summaryoutput[["likelihoods"]].
names	Labels for parameters or derived quantities to include, should match substring of labels in summaryoutput[["pars"]] or summaryoutput[["quants"]].
digits	Optional vector of the number of decimal digits to use in reporting each quantity.
modelnames	optional vector of labels to use as column names. Default is 'model1','model2',etc.
csv	write resulting table to CSV file?
csvdir	directory for optional CSV file
csvfile	filename for CSV file
verbose	report progress to R GUI?
mcmc	summarize MCMC output in table?

Author(s)

Ian Taylor

See Also

SSsummarize(), SSplotComparisons(), SS_output()

r4ss documentation built on May 28, 2022, 1:11 a.m.