SSplotMovementRates: Plot movement rates from model output

In r4ss: R Code for Stock Synthesis

Plot movement rates from model output

Description

Plots estimated movement rates in final year for each area/season with movement as reported in Report.sso. If movement is time-varying, an additional figure shows pattern across years (if the MGparm_By_Year_after_adjustments table (report:7) is available in the Report.sso file)

Usage

SSplotMovementRates(
  replist,
  plot = TRUE,
  print = FALSE,
  subplots = 1:2,
  plotdir = "default",
  colvec = "default",
  ylim = "default",
  legend = TRUE,
  legendloc = "topleft",
  moveseas = "all",
  min.move.age = 0.5,
  pwidth = 6.5,
  pheight = 5,
  punits = "in",
  res = 300,
  ptsize = 10,
  cex.main = 1,
  verbose = TRUE
)

Arguments

replist	A list object created by SS_output().
plot	plot to active plot device?
print	print to PNG files?
subplots	which subplots to create.
plotdir	where to put the plots (uses model directory by default)
colvec	vector of colors for each movement rate in the plot
ylim	optional input for y range of the plot. By default plot ranges from 0 to 10% above highest movement rate (not including fish staying in an area).
legend	add a legend designating which color goes with which pair of areas?
legendloc	location passed to legend function (if used)
moveseas	choice of season for which movement rates are shown
min.move.age	Minimum age of movement (in future will come from Report file)
pwidth	width of plot
pheight	height of plot
punits	units for PNG file
res	Resolution of plots printed to files. The default is res = 300.
ptsize	point size for PNG file
cex.main	Character expansion parameter for plot titles
verbose	Print information on function progress.

Author(s)

Ian Taylor

See Also

SS_output(), SSplotMovementRates(),

Examples

## Not run: 
SSplotMovementRates(myreplist)

## End(Not run)

r4ss documentation built on May 28, 2022, 1:11 a.m.