SSplotDiscard: Plot fit to discard fraction.

In r4ss: R Code for Stock Synthesis

Plot fit to discard fraction.

Description

Plot fit to discard fraction from Stock Synthesis output file.

Usage

SSplotDiscard(
  replist,
  subplots = 1:2,
  plot = TRUE,
  print = FALSE,
  plotdir = "default",
  fleets = "all",
  fleetnames = "default",
  datplot = FALSE,
  labels = c("Year", "Discard fraction", "Total discards", "for"),
  yhi = 1,
  ymax = NULL,
  col1 = "blue",
  col2 = "black",
  pwidth = 6.5,
  pheight = 5,
  punits = "in",
  res = 300,
  ptsize = 10,
  cex.main = 1,
  verbose = TRUE
)

Arguments

replist	A list object created by SS_output().
subplots	Vector of which plots to make (1 = data only, 2 = with fit). If plotdat = FALSE then subplot 1 is not created, regardless of choice of subplots.
plot	Plot to active plot device?
print	Print to PNG files?
plotdir	Directory where PNG files will be written. by default it will be the directory where the model was run.
fleets	Optional vector to subset fleets for which plots will be made
fleetnames	Optional replacement for fleenames used in data file
datplot	Make data-only plot of discards? This can override the choice of subplots.
labels	Vector of labels for plots (titles and axis labels)
yhi	Maximum y-value which will always be included in the plot (all data included regardless). Default = 1 so that discard fractions are always plotted on a 0-1 range, but total discard amounts which are greater than this value will exceed it.
ymax	Optional maximum y-value to include (useful if upper tails on discard amounts are very high)
col1	First color to use in plot (for expected values)
col2	Second color to use in plot (for observations and intervals)
pwidth	Width of plot
pheight	Height of plot
punits	Units for PNG file
res	Resolution of plots printed to files. The default is res = 300.
ptsize	Point size for PNG file
cex.main	Character expansion for plot titles
verbose	Report progress to R GUI?

Author(s)

Ian G. Taylor, Ian J. Stewart, Robbie L. Emmet

See Also

SS_plots()

r4ss documentation built on May 28, 2022, 1:11 a.m.