getBiomass: Get total aboveground biomass of tree

In rBDAT: Implementation of BDAT Tree Taper Fortran Functions

Get total aboveground biomass of tree

Description

this function calculates total aboveground biomass for a given tree

Usage

getBiomass(tree, ...)

## S3 method for class 'data.frame'
getBiomass(tree, mapping = NULL, ...)

## S3 method for class 'list'
getBiomass(tree, mapping = NULL, ...)

## S3 method for class 'datBDAT'
getBiomass(tree, mapping = NULL, ...)

Arguments

tree	either a data.frame or a list containing the variables needed to decribe a tree, i.e. spp, D1, H, and optionally H1, D2, H2. See buildTree for details and parameter mapping for mapping of variable names
...	passing arguments to methods.
mapping	mapping of variable names in case a data.frame is given into parameter tree between colnames(tree) and required parameter names. See details.

Details

This function returns total aboveground biomass according to the biomass functions developed for the german NFI3 (BWI3) on the basis of a field survey covering whole Germany from 2007 to 2010. Hence, the base data differs from those used to fit the taper functions. Neverteless and although the original fortran code does not provide an interface to pass H2 or negative D2 values to the functions (they were fitted with abolute D03-values, i.e. diameter in 30 for reasons of consistency.

The functions themselves are fitted for four species (Norway spruce, Scots pine, European beech and Oak spp.) directly, and for another fourteen species by generating pseudo-observations and fitting the functions to these. See the enclosed report for details.

The biomass functions integrate four different ranges of validity: (i) tree height below 1.3m, (ii) dbh below 10cm, (iii) dbh between 10cm and the 99th-quantile of the data and (iv) dbh above.

Value

vector of total aboveground biomass

Methods (by class)

• getBiomass(data.frame): transforming data.frame before calling getBiomass using buildTree

• getBiomass(list): transforming list before calling getBiomass using buildTree

• getBiomass(datBDAT): class method for class datBDAT

References

Riedel, T. and G. Kaendler (2017). "Nationale Treibhausgasberichterstattung: Neue Funktionen zur Schätzung der oberirdischen Biomasse am Einzelbaum." Forstarchiv 88(2): 31-38.

Examples

tree <- data.frame(spp = c(1, 1), D1 = c(30, 25), H = c(25, 25))
getBiomass(tree)

tree <- data.frame(BDATCode = c(1, 1), dbh = c(30, 25), h = c(25, 25))
getBiomass(tree, mapping = c("BDATCode" = "spp", "dbh" = "D1", "h" = "H"))

tree <- data.frame(BDATCode = c(1, 1), dbh = c(30, 25), h = c(25, 25))
getBiomass(tree = tree, mapping = c("BDATCode" = "spp", "dbh" = "D1", "h" = "H"))

## this is standard usage of the fortran code
## now changing the taper form via second diameter D2
tree <- data.frame(spp = 1, D1 = 30, D2 = c(26, 24), H = 25)
getBiomass(tree)

## the following usage of D2 and H2 w.r.t. the biomass functions are new
## and unique to R
## now changing the taper form via quantile of second diameter in H2
tree <- data.frame(spp = 1, D1 = 30, H2 = c(25, 50, 75), H = 25)
getBiomass(tree)

## now changing the taper form via form quotient (i.e. negative D2)
fq <- getForm(list(spp = 1, D1 = 30, H = 25), inv = 1:4)
tree <- data.frame(spp = 1, D1 = 30, D2 = -fq, H = 25)
getBiomass(tree) # biomass of an average tree according to different inventories

rBDAT documentation built on May 29, 2024, 3:08 a.m.