rDNAse: Generating Various Numerical Representation Schemes of DNA Sequences

Comprehensive toolkit for generating various numerical representation schemes of DNA sequence. The descriptors and similarity scores included are extensively used in bioinformatics and chemogenomics.

AuthorMin-feng Zhu <wind2zhu@163.com>, Jie Dong <biomed@csu.edu.cn>, Dong-sheng Cao <oriental-cds@163.com>
Date of publication2016-07-14 07:18:52
MaintainerMin-feng Zhu <wind2zhu@163.com>
LicenseGPL (>= 2)
Version1.1-1
https://github.com/wind22zhu/rDNAse

View on CRAN

Files in this package

rDNAse
rDNAse/inst
rDNAse/inst/dnaseq
rDNAse/inst/dnaseq/H_sapiens_pos.fasta
rDNAse/inst/dnaseq/coldspots.fasta
rDNAse/inst/dnaseq/neg.fasta
rDNAse/inst/dnaseq/hotspots.fasta
rDNAse/inst/dnaseq/non-hs.fasta
rDNAse/inst/dnaseq/hs.fasta
rDNAse/inst/dnaseq/H_sapiens_neg.fasta
rDNAse/inst/dnaseq/pos.fasta
rDNAse/inst/sysdata
rDNAse/inst/sysdata/12_trinucleotide_physicochemical_indices.csv
rDNAse/inst/sysdata/6_dinucleotide_physicochemical_indices.csv
rDNAse/inst/sysdata/38_dinucleotide_physicochemical_indices.csv
rDNAse/inst/doc
rDNAse/inst/doc/rDNAse.Rnw
rDNAse/inst/doc/rDNAse.pdf
rDNAse/inst/doc/rDNAse.R
rDNAse/NAMESPACE
rDNAse/R
rDNAse/R/extrPseKNC.R rDNAse/R/extrPseDNC.R rDNAse/R/extrDCC.R rDNAse/R/extrDACC.R rDNAse/R/extrDAC.R rDNAse/R/dnacheck.R rDNAse/R/extrTAC.R rDNAse/R/parSeqSim.R rDNAse/R/extrTACC.R rDNAse/R/extrTCC.R rDNAse/R/make_kmer_index.R rDNAse/R/IncDiv.R rDNAse/R/parGOSim.R rDNAse/R/readFASTA.R rDNAse/R/kmer.R rDNAse/R/revchars.R rDNAse/R/getGenbank.R
rDNAse/vignettes
rDNAse/vignettes/rDNAse.Rnw
rDNAse/vignettes/fig
rDNAse/vignettes/fig/roc.pdf
rDNAse/vignettes/fig/logo-panel-text.pdf
rDNAse/vignettes/rDNAse.bib
rDNAse/MD5
rDNAse/build
rDNAse/build/vignette.rds
rDNAse/DESCRIPTION
rDNAse/man
rDNAse/man/make_kmer_index.Rd rDNAse/man/parSeqSim.Rd rDNAse/man/parGOSim.Rd rDNAse/man/extrTCC.Rd rDNAse/man/make_idkmer_vec.Rd rDNAse/man/extrDCC.Rd rDNAse/man/diversity.Rd rDNAse/man/extrPseDNC.Rd rDNAse/man/extrDAC.Rd rDNAse/man/readFASTA.Rd rDNAse/man/extrDACC.Rd rDNAse/man/id_x_s.Rd rDNAse/man/getGenbank.Rd rDNAse/man/twoSeqSim.Rd rDNAse/man/dnacheck.Rd rDNAse/man/twoGOSim.Rd rDNAse/man/revchars.Rd rDNAse/man/extrTACC.Rd rDNAse/man/extrTAC.Rd rDNAse/man/extrPseKNC.Rd rDNAse/man/kmer.Rd

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