make_kmer_index: Calculate The Basic Kmer Feature Vector
In rDNAse: Generating Various Numerical Representation Schemes of DNA Sequences
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Calculate The Basic Kmer Feature Vector
Usage
1
make_kmer_index(k, alphabet = "ACGT")
Arguments
k
the k value of kmer, it should be an integer larger than 0.
alphabet
the
Details
This function calculate the basic kmer feature vector.
Value
The result character vector
Author(s)
Min-feng Zhu <wind2zhu@163.com>
See Also
See kmer
Examples
1
make_kmer_index(2, alphabet = "ACGT")
Example output
[1] "AA" "AC" "AG" "AT" "CA" "CC" "CG" "CT" "GA" "GC" "GG" "GT" "TA" "TC" "TG"
[16] "TT"
rDNAse documentation built on May 2, 2019, 4:16 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Calculate The Basic Kmer Feature Vector
Usage
1 | make_kmer_index(k, alphabet = "ACGT")
|
Arguments
k |
the k value of kmer, it should be an integer larger than 0. |
alphabet |
the |
Details
This function calculate the basic kmer feature vector.
Value
The result character vector
Author(s)
Min-feng Zhu <wind2zhu@163.com>
See Also
See kmer
Examples
1 | make_kmer_index(2, alphabet = "ACGT")
|
Example output
[1] "AA" "AC" "AG" "AT" "CA" "CC" "CG" "CT" "GA" "GC" "GG" "GT" "TA" "TC" "TG"
[16] "TT"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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