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#' Creates a temporary table in the database
#'
#' This function is useful if most of your work is on a subset of the database
#'
#' The table will exist for as long as the database connection is kept open
#' The Select_query argument will take the output from a select_events(sql_only = TRUE) based function
#'
#' @export
#'
#' @param db a database connection object
#' @param tab_name character name for the teporary table
#' @param select_query character the query that specifies the temporary table
#' @examples \dontrun{
#' db <- database("myCPRDdb")
#' temp_table(db, tab_name = "post_2005",
#' select_query = select_events(db, tab = "Referral",
#' columns = c("patid", "eventdate", "medcode"),
#' where = "eventdate > '2005-01-01'",
#' sql_only = TRUE))
#' }
temp_table <- function(db, tab_name, select_query){
dbGetQuery(db, paste("CREATE TEMP TABLE", tab_name, "AS", select_query, ";"))
message(sprintf("Temporary table '%s' created", tab_name))
}
#' Appends rows to a temporary table
#'
#' This function checks if a table is a temp table and then adds to it based on the select statement
#' The check is to maintain the integrity of the database
#'
#' @export
#'
#' @param db a database connection
#' @param tab_name the name of the temporary table being appended to
#' @param columns character vector of columns in tab_name
#' @param select_query SQL query for the selector
append_to_temp_table <- function(db, tab_name, columns, select_query){
temp_names <- as.character(sqldf("SELECT name FROM sqlite_temp_master", connection=db)$name)
if(tab_name %in% temp_names){
message("Inserting...", appendLF = FALSE)
sqldf(paste("INSERT INTO", tab_name, "(", paste(columns, collapse = ", "), ")", select_query), connection = db)
message(sprintf("Finished appending to temporary table '%s'.", tab_name))
} else message(sprintf("%s is not a temporary table in this database!"), tab_name)
}
#' Send a dataframe to a temporary table in the database
#'
#' The table is a temporary database and is linked only to the current connection object
#'
#' @export
#'
#' @param db a database connection
#' @param tab_name character name for the new temporary database table
#' @param dat dataframe to send to the temporary database table
#' @param overwrite logical if a table already exists with the same name should it be dropped?
to_temp_table <- function(db, tab_name, dat, overwrite = FALSE){
temp_tables <- unlist(dbGetQuery(db, "select name from sqlite_temp_master;"))
if(overwrite && tab_name %in% temp_tables){
drop_temp_table(db, tab_name)
} else if(tab_name %in% temp_tables){
message("Temp table ", tab_name, " already exists - No action taken")
return(invisible())
}
temp_tab_name <- paste("temp", tab_name, sep = ".")
dbWriteTable(db, name = temp_tab_name, value = dat, row.names = FALSE)
dat_name <- deparse(substitute(dat))
message("Sent ", dat_name, " to temporary database ", tab_name)
}
#' Checks if a temporary table exists and then deletes if it does
#'
#' @export
#'
#' @param db a database connection
#' @param tab_name character the name of the table of interest
drop_temp_table <- function(db, tab_name){
temp_names <- as.character(sqldf("SELECT name FROM sqlite_temp_master", connection=db)$name)
if(tab_name %in% temp_names){
dbRemoveTable(db, tab_name)
message(sprintf("Temporary table '%s' removed", tab_name))
} else message(sprintf("Temporary table '%s' not found", tab_name))
}
#' drops all temporary tables from the database
#'
#' This is useful for temporary storage/memory management
#'
#' @export
#'
#' @param db a database connection
drop_all_temp_tables <- function(db){
temp_tables <- head(db, temp = TRUE)$name
if(length(temp_tables)){
for(tab_name in temp_tables){
dbRemoveTable(db, tab_name)
message(sprintf("Temporary table '%s' removed", tab_name))
}
} else message("No temporary tables in database to remove")
}
#' Sets location of the db temporary store for temporary tables
#'
#' By default, sqlite stores temp tables in /tmp (Or windows equivalent). If you are building large temporary tables
#' and don't have a large /tmp directory, you can get "database or disk is full" errors.
#' If you have a lot of RAM you can set \code{store} to "RAM" and the temp files will be stored in RAM
#' rather than in /tmp. This could also speed things up.
#'
#' @export
#'
#' @param db a database connection
#' @param store character vector either "tmp" or "RAM"
temp_location <- function(db, store = c("tmp", "RAM")){
store <- match.arg(store)
switch(store,
tmp = sqldf("pragma temp_store = 1", connection = db),
RAM = sqldf("pragma temp_store = 2", connection = db))
}
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