Man pages for rPDBapi
A Comprehensive Interface for Accessing the Protein Data Bank
| add_property | Add or Merge Properties for RCSB PDB Data Fetching |
| autoresolve_sequence_type | Automatically Determine the Sequence Type |
| ChemicalOperator | Create a Chemical Search Operator for SMILES/InChI... |
| ComparisonOperator | Create a Comparison Search Operator |
| ContainsPhraseOperator | Create a Contains Phrase Search Operator |
| ContainsWordsOperator | Create a Contains Words Search Operator |
| data_fetcher | Fetch RCSB PDB Data Based on Specified Criteria |
| DefaultOperator | Create a Default Search Operator |
| describe_chemical | Describe Chemical Compound from RCSB PDB |
| ExactMatchOperator | Create an Exact Match Search Operator |
| ExistsOperator | Create an Existence Search Operator |
| fetch_data | Fetch Data from RCSB PDB Using a JSON Query |
| find_papers | Search for and Retrieve Paper Titles from PDB |
| find_results | Retrieve Specific Fields for Search Results from RCSB PDB |
| generate_json_query | Generate a JSON Query for RCSB PDB Data Retrieval |
| get_fasta_from_rcsb_entry | Retrieve FASTA Sequence from PDB Entry or Specific Chain |
| get_info | Retrieve Information for a Given PDB ID |
| get_pdb_api_url | Generate a PDB API URL |
| get_pdb_file | Download and Process PDB Files from the RCSB Database |
| handle_api_errors | Handle API Errors |
| infer_search_service | Infer the Appropriate Search Service for RCSB PDB Queries |
| InOperator | Create an Inclusion Search Operator |
| parse_fasta_text_to_list | Helper Function: Parse FASTA Text to List Grouped by Header |
| parse_response | Parse API Response |
| perform_search | Perform a Search in the RCSB PDB |
| QueryGroup | Create a Grouped Query Object for RCSB PDB Searches |
| QueryNode | Create a Query Node for RCSB PDB Searches |
| query_search | Search Query Function |
| RangeOperator | Create a Range Search Operator |
| RequestOptions | Define Request Options for RCSB PDB Search Queries |
| return_data_as_dataframe | Convert RCSB PDB Response Data into a Dataframe |
| rPDBapi-package | rPDBapi: A Comprehensive Interface for Accessing the Protein... |
| ScoredResult | Create a Scored Result Object for PDB Searches |
| search_graphql | Perform a GraphQL Query to RCSB PDB |
| send_api_request | Send API Request to a Specified URL |
| SeqMotifOperator | Create a Sequence Motif Operator for RCSB PDB Searches |
| SequenceOperator | Create a Sequence Operator for Sequence-Based Searches |
| StructureOperator | Create a Structure Operator for Structure-Based Searches |
| walk_nested_dict | Recursively Walk Through a Nested Dictionary |
