Man pages for rPDBapi
A Comprehensive Interface for Accessing the Protein Data Bank
| add_property | Add or Merge Properties for RCSB PDB Data Fetching |
| as_rpdb_assembly | Convert Data to an rPDBapi Assembly Object |
| as_rpdb_chemical_component | Convert Data to an rPDBapi Chemical Component Object |
| as_rpdb_entry | Convert Data to an rPDBapi Entry Object |
| as_rpdb_polymer_entity | Convert Data to an rPDBapi Polymer Entity Object |
| as_rpdb_structure | Convert Data to an rPDBapi Structure Object |
| autoresolve_sequence_type | Automatically Determine the Sequence Type |
| build_assembly_id | Build an Assembly Identifier |
| build_entity_id | Build an Entity Identifier |
| build_entry_id | Build an Entry Identifier |
| build_instance_id | Build an Instance Identifier |
| cache_info | Inspect rPDBapi Cache Contents |
| ChemicalOperator | Create a Chemical Search Operator for SMILES/InChI... |
| clear_rpdbapi_cache | Clear rPDBapi Cache Directory |
| ComparisonOperator | Create a Comparison Search Operator |
| ContainsPhraseOperator | Create a Contains Phrase Search Operator |
| ContainsWordsOperator | Create a Contains Words Search Operator |
| data_fetcher | Fetch RCSB PDB Data Based on Specified Criteria |
| data_fetcher_batch | Batch Fetch RCSB PDB Data with Optional Retry and Cache |
| DefaultOperator | Create a Default Search Operator |
| describe_chemical | Describe Chemical Compound from RCSB PDB |
| ExactMatchOperator | Create an Exact Match Search Operator |
| ExistsOperator | Create an Existence Search Operator |
| extract_calpha_coordinates | Extract C-alpha Coordinates |
| extract_ligand_table | Extract Ligand Table |
| extract_taxonomy_table | Extract Taxonomy Table |
| fetch_data | Fetch Data from RCSB PDB Using a JSON Query |
| find_papers | Search for and Retrieve Paper Titles from PDB |
| find_results | Retrieve Specific Fields for Search Results from RCSB PDB |
| generate_json_query | Generate a JSON Query for RCSB PDB Data Retrieval |
| get_fasta_from_rcsb_entry | Retrieve FASTA Sequence from PDB Entry or Specific Chain |
| get_info | Retrieve Information for a Given PDB ID |
| get_pdb_api_url | Generate a PDB API URL |
| get_pdb_file | Download and Process PDB Files from the RCSB Database |
| handle_api_errors | Handle API Errors |
| infer_id_type | Infer RCSB Identifier Type |
| infer_search_service | Infer the Appropriate Search Service for RCSB PDB Queries |
| InOperator | Create an Inclusion Search Operator |
| join_structure_sequence | Join Structure and Sequence Summaries |
| list_rcsb_fields | List Known RCSB Fields by Data Type |
| parse_fasta_text_to_list | Helper Function: Parse FASTA Text to List Grouped by Header |
| parse_rcsb_id | Parse an RCSB Identifier |
| parse_response | Parse API Response |
| perform_search | Perform a Search in the RCSB PDB |
| QueryGroup | Create a Grouped Query Object for RCSB PDB Searches |
| QueryNode | Create a Query Node for RCSB PDB Searches |
| query_search | Search Query Function |
| RangeOperator | Create a Range Search Operator |
| RequestOptions | Define Request Options for RCSB PDB Search Queries |
| return_data_as_dataframe | Convert RCSB PDB Response Data into a Dataframe |
| rPDBapi-package | rPDBapi: A Comprehensive Interface for Accessing the Protein... |
| ScoredResult | Create a Scored Result Object for PDB Searches |
| search_graphql | Perform a GraphQL Query to RCSB PDB |
| search_rcsb_fields | Search Known RCSB Fields by Pattern |
| send_api_request | Send API Request to a Specified URL |
| SeqMotifOperator | Create a Sequence Motif Operator for RCSB PDB Searches |
| SequenceOperator | Create a Sequence Operator for Sequence-Based Searches |
| StructureOperator | Create a Structure Operator for Structure-Based Searches |
| summarize_assemblies | Summarize Assembly-Level Data |
| summarize_entries | Summarize Entry-Level Data |
| validate_properties | Validate Property Specification Against Known Field Registry |
| walk_nested_dict | Recursively Walk Through a Nested Dictionary |
