add.dens | Plot the Posterior Density for each Ancestor in 3D Space |
add.polygons | Plot the Distributions for the Phylogenetic Tips in 3D |
bigauss_pdf | Bivariate Gaussian PDF |
bm_ase | Bayesian Ancestral State Estimation with Points |
bm_loglik_ancestors | Likelihood of ancestors using points |
bm_loglik_duo | Likelihood of a 2-dimensional point with one daughter and one... |
bm_loglik_tree | Point Brownian motion tree likelihood |
bm_loglik_tree_constrained | Range Brownian motion tree likelihood |
bm_loglik_trio | Fast likelihood of a 2-dimensional point with two daughters... |
bm_propose_duo | MCMC proposal for a 2-dimensional point with one daughter and... |
bm_propose_trio | MCMC proposal for a 2-dimensional point with two daughters... |
data.for.3d | Transform Output for 3D Plotting |
make_bm_est_sigma2 | Estimate Sigma and Sigma Variance |
make_bm_loglik_ancestors_poly | Fast likelihood of ancestors using polygons |
name.poly | Name & Order Polygons According to the Phylogeny |
phylo.3d | Plots a Phylogenic Tree in 3D |
point.like.bm | n-dimensional Maximum Likelihood of Point Brownian Motion |
poly_center | Calculate the Polygon Center |
ranges.like.bm | n-dimensional Maximumn Likelihood of Range Brownian Motion |
rase | Bayesian Range Ancestral State Estimation of Polygons |
rase_data | Psophia Data Used for rase Package |
rase-package | Range Ancestral State Estimation |
rase.slice | Ancestral State Estimation At Any Given Time Slice |
shape.to.rase | Transform a Shapefile into 'owin.object' Format |
tree.slice | Identify Tree Branches That Intersect With a Given Time... |
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