rase_data: Psophia Data Used for rase Package

In rase: Range Ancestral State Estimation for Phylogeography and Comparative Analyses

Description

Data used for Quintero et al, (2015) extracted from Ribas et al (2012). It contains the phylogenetic tree and current geographic distributions for the genus Psophia.

Usage

rase_data

Format

psophia_shp contains the distributions of Psophia species as shapefiles in the format SpatialPolygonsDataFrame. psophia_poly contains the distributions of Psophia species as a list of polygons in owin.object format used as input for rase. psophia_tree contains Psophia's phylogenetic tree in phylo format. mcmc contains the MCMC chain of rase run over the Psophia data after a 2000 burnin period and sampling every 10 iterations.

Source

Ribas, C. C., Aleixo, A., Nogueira, A. C. R., Miyaki, C. Y., and Cracraft, J. 2011 A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years. Proc. R. Soc. B.

Quintero, I., Keil, P., Jetz, W., Crawford, F. W. 2015 Historical Biogeography Using Species Geographical Ranges. Systematic Biology. doi: 10.1093/sysbio/syv057

rase documentation built on May 2, 2019, 12:46 p.m.