Description Usage Format Source
Data used for Quintero et al, (2015) extracted from Ribas et al (2012). It contains the phylogenetic tree and current geographic distributions for the genus Psophia.
1 | rase_data
|
psophia_shp
contains the distributions of Psophia species as shapefiles in the format
SpatialPolygonsDataFrame
.
psophia_poly
contains the distributions of Psophia species as a list of polygons in owin.object
format used as input for rase
.
psophia_tree
contains Psophia's phylogenetic tree in phylo
format.
mcmc
contains the MCMC chain of rase run over the Psophia data after a 2000 burnin period and sampling every 10 iterations.
Ribas, C. C., Aleixo, A., Nogueira, A. C. R., Miyaki, C. Y., and Cracraft, J. 2011 A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years. Proc. R. Soc. B.
Quintero, I., Keil, P., Jetz, W., Crawford, F. W. 2015 Historical Biogeography Using Species Geographical Ranges. Systematic Biology. doi: 10.1093/sysbio/syv057
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