bm_propose_trio: MCMC proposal for a 2-dimensional point with two daughters...
In rase: Range Ancestral State Estimation for Phylogeography and Comparative Analyses
Description
Usage
Arguments
Value
Author(s)
References
See Also
Description
For internal use only.
Usage
1
bm_propose_trio(a, d1, d2, s, t1, t2, sigma2x, sigma2y)
Arguments
a
vector with current ancestor value (x & y).
d1
vector with current first daughter value (x & y).
d2
vector with current second daughter value (x & y).
s
time separating node being proposed from ancestor.
t1
time separating node being proposed from first daughter.
t2
time separating node being proposed from second ancestor.
sigma2x
current value for sigma2x.
sigma2y
current value for sigma2y.
Value
a list with 3 objects. The vector proposal ($value), the logforward probability ($logfwdprob), and the logbackward probability ($logbwdprob).
Author(s)
Forrest Crawford
References
Quintero, I., Keil, P., Jetz, W., Crawford, F. W. 2015 Historical Biogeography Using Species Geographical Ranges. Systematic Biology. doi: 10.1093/sysbio/syv057
See Also
rase documentation built on May 2, 2019, 12:46 p.m.
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Description Usage Arguments Value Author(s) References See Also
Description
For internal use only.
Usage
1 | bm_propose_trio(a, d1, d2, s, t1, t2, sigma2x, sigma2y)
|
Arguments
a |
vector with current ancestor value (x & y). |
d1 |
vector with current first daughter value (x & y). |
d2 |
vector with current second daughter value (x & y). |
s |
time separating node being proposed from ancestor. |
t1 |
time separating node being proposed from first daughter. |
t2 |
time separating node being proposed from second ancestor. |
sigma2x |
current value for sigma2x. |
sigma2y |
current value for sigma2y. |
Value
a list with 3 objects. The vector proposal ($value), the logforward probability ($logfwdprob), and the logbackward probability ($logbwdprob).
Author(s)
Forrest Crawford
References
Quintero, I., Keil, P., Jetz, W., Crawford, F. W. 2015 Historical Biogeography Using Species Geographical Ranges. Systematic Biology. doi: 10.1093/sysbio/syv057
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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