rba_jaspar_collections: List collections available in JASPAR

In rbioapi: User-Friendly R Interface to Biologic Web Services' API

List collections available in JASPAR

Description

JASPAR organizes matrix profiles into collections. Using this function, you can retrieve a list of available collections in a JASPAR release.

Usage

rba_jaspar_collections(release = 2024, ...)

Arguments

release	Numeric: (default = 2024) Which JASPAR database release to use? Available options are: 2024, 2022, 2020, 2018, 2016, and 2014.
...	rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A data frame with collections' names and URLs.

Corresponding API Resources

"GET https://jaspar.elixir.no/api/v1/collections/"

References

• Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Chèneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles Nucleic Acids Res. in_press; doi: 10.1093/nar/gkad1059

• Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804

• JASPAR API Documentation

• Citations note on JASPAR website

See Also

Other "JASPAR": rba_jaspar_collections_matrices(), rba_jaspar_matrix(), rba_jaspar_matrix_search(), rba_jaspar_matrix_versions(), rba_jaspar_releases(), rba_jaspar_sites(), rba_jaspar_species(), rba_jaspar_species_matrices(), rba_jaspar_taxons(), rba_jaspar_taxons_matrices(), rba_jaspar_tffm(), rba_jaspar_tffm_search()

Examples

rba_jaspar_collections(release = 2024)

rbioapi documentation built on April 4, 2025, 5:04 a.m.