rba_jaspar_matrix_versions: List matrix profile versions associated with a base ID

In rbioapi: User-Friendly R Interface to Biologic Web Services' API

List matrix profile versions associated with a base ID

Description

Since JASPAR release 2010, the matrix profiles are versioned; So, a matrix profile Identifier has "base_id.version" naming schema. Using this function you can retrieve a list of matrix profiles associated with a base (stable) ID.

Usage

rba_jaspar_matrix_versions(base_id, order = NULL, ...)

Arguments

base_id	Character: A base (stable) Identifier. A matrix profile identifier has "base_id.version" naming schema
order	Character: A character string or a vector of character strings of field names that will be used to order the results. Providing multiple field names is supported. You can also use prefix "-" before a field name to indicate reverse ordering.
...	rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A data frame of matrix profiles' versions information.

Corresponding API Resources

"GET https://jaspar.elixir.no/api/v1/matrix/{base_id}/versions/"

References

• Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Chèneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles Nucleic Acids Res. in_press; doi: 10.1093/nar/gkad1059

• Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804

• JASPAR API Documentation

• Citations note on JASPAR website

See Also

Other "JASPAR": rba_jaspar_collections(), rba_jaspar_collections_matrices(), rba_jaspar_matrix(), rba_jaspar_matrix_search(), rba_jaspar_releases(), rba_jaspar_sites(), rba_jaspar_species(), rba_jaspar_species_matrices(), rba_jaspar_taxons(), rba_jaspar_taxons_matrices(), rba_jaspar_tffm(), rba_jaspar_tffm_search()

Examples

rba_jaspar_matrix_versions("MA0600")

rbioapi documentation built on April 4, 2025, 5:04 a.m.