Description Usage Format Source Examples
8 schools analysis from section 5.5 of "Bayesian Data Analysis" by Andrew Gelman, John B. Carlin, Hal S. Stern, and Donald B. Rubin.
1 |
A data frame with 8 observations on the following 3 variables.
a factor with levels A
B
C
D
E
F
G
H
a numeric vector
a numeric vector
Gelman, A., Carlin, J.B., Stern, H.S., Rubin, D.B. (2003): Bayesian Data Analysis, 2nd edition, CRC Press.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | data(schools)
J <- nrow(schools)
y <- schools$estimate
y <- rnorm(length(y))
sigma.y <- schools$sd
schools.data <- list ("J", "y", "sigma.y")
## schools.data <- list(J=J, y=y, sigma.y=sigma.y)
inits <- function() {list (theta=rnorm(J,0,100),
mu.theta=rnorm(1,0,100),
sigma.theta=runif(1,0,100))}
parameters <- c("theta", "mu.theta", "sigma.theta")
schools.bug <- system.file("bugs/model/schools.bug", package="rbugs")
file.show(schools.bug)
## Not run:
## no tested examples for mac-os.
schools.sim <- rbugs(data=schools.data, inits, parameters,
schools.bug, n.chains=3, n.iter=1000,
bugs="/usr/bin/OpenBUGS",
bugsWorkingDir="~/tmp/")
## generate files only
schools.sim <- rbugs(data=schools.data, inits, parameters,
schools.bug, n.chains=3, n.iter=1000,
bugsWorkingDir="~/tmp/",
OpenBugs=TRUE, genFilesOnly=TRUE)
## MCMC analysis
library("coda")
schools.mcmc <- rbugs2coda(schools.sim)
summary(schools.mcmc)
effectiveSize(schools.mcmc)
gelman.diag(schools.mcmc)
## End(Not run)
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