Provides tools to enable the researcher to more precisely conduct respirometry experiments. Strong emphasis is on aquatic respirometry. Tools focus on helping the researcher setup and conduct experiments. Analysis of the resulting data is not a focus since analyses are often specific to a particular setup, and thus are better created by the researcher individually. This package provides tools for intermittent, flow-through, and closed respirometry techniques.

Author | Matthew A. Birk |

Date of publication | 2016-12-31 08:44:52 |

Maintainer | Matthew A. Birk <matthewabirk@gmail.com> |

License | GPL-3 |

Version | 0.3.1 |

**calc_b:** Calculate the metabolic scaling coefficient, b

**calc_MO2:** Calculate metabolic rate

**closed:** Closed respirometry

**co2_add:** Calculate CO2 to add to water

**co2_flush:** Calculate CO2 to add to flush reservoir

**co2_rate:** Calculate CO2 to add to a respirometer intake flow

**conv_NH4:** Convert between units of ammonium

**conv_o2:** Convert between units of oxygen partial pressure and...

**conv_resp_unit:** Convert units related to respirometry

**correct_bubble:** Adjust respirometer volume for bubbles

**flush_carb:** Estimate carbonate chemistry after a flush

**flush_o2:** Estimate dissolved O2 after a flush

**flush_water:** Find percent of water exchanged after a flush

**goal_flush_pH:** Calculate goal pH of a flush reservoir to achieve the...

**guess_TA:** Estimate total alkalinity from salinity

**guess_when:** Estimate when the O2 level will reach a defined level

**import_firesting:** Import data from a FireSting O2 transmitter

**import_presens:** Import data from a PreSens O2 transmitter

**import_witrox:** Import data from a Loligo Systems Witrox O2 transmitter

**max_MO2:** Maximum MO2 supported by flow rate

**mean_pH:** Mean pH by [H+]

**min_flow:** Minimum flow rate to support MO2

**peri_pump:** Calculate peristaltic pump gaseous flow rate

**predict_NH4:** Predict NH4 concentration post-respiration

**predict_pH:** Predict pH post-respiration

**Q10:** Parameters of Q10 Temperature Coefficient

**respirometry:** Tools for Conducting Respirometry Experiments

**RQ:** Calculate respiratory quotient

**scale_MO2:** Scale metabolic rate by size

respirometry

respirometry/inst

respirometry/inst/extdata

respirometry/inst/extdata/witrox_file.txt

respirometry/inst/extdata/fibox_4_file.csv

respirometry/inst/extdata/firesting_file.txt

respirometry/inst/extdata/fibox_3_file.txt

respirometry/NAMESPACE

respirometry/NEWS

respirometry/R

respirometry/R/co2_add.R
respirometry/R/mean_pH.R
respirometry/R/min_flow.R
respirometry/R/import_presens.R
respirometry/R/flush_water.R
respirometry/R/conv_o2.R
respirometry/R/peri_pump.R
respirometry/R/conv_resp_unit.R
respirometry/R/conv_NH4.R
respirometry/R/calc_MO2.R
respirometry/R/guess_when.R
respirometry/R/correct_bubble.R
respirometry/R/guess_TA.R
respirometry/R/predict_NH4.R
respirometry/R/import_witrox.R
respirometry/R/co2_flush.R
respirometry/R/RQ.R
respirometry/R/respirometry.R
respirometry/R/goal_flush_pH.R
respirometry/R/predict_pH.R
respirometry/R/flush_o2.R
respirometry/R/co2_rate.R
respirometry/R/flush_carb.R
respirometry/R/import_firesting.R
respirometry/R/scale_MO2.R
respirometry/R/calc_b.R
respirometry/R/Q10.R
respirometry/R/closed.R
respirometry/R/max_MO2.R
respirometry/MD5

respirometry/DESCRIPTION

respirometry/man

respirometry/man/mean_pH.Rd
respirometry/man/co2_rate.Rd
respirometry/man/conv_NH4.Rd
respirometry/man/max_MO2.Rd
respirometry/man/conv_o2.Rd
respirometry/man/import_witrox.Rd
respirometry/man/correct_bubble.Rd
respirometry/man/import_presens.Rd
respirometry/man/closed.Rd
respirometry/man/calc_b.Rd
respirometry/man/guess_TA.Rd
respirometry/man/flush_o2.Rd
respirometry/man/import_firesting.Rd
respirometry/man/min_flow.Rd
respirometry/man/co2_flush.Rd
respirometry/man/scale_MO2.Rd
respirometry/man/flush_carb.Rd
respirometry/man/respirometry.Rd
respirometry/man/goal_flush_pH.Rd
respirometry/man/predict_NH4.Rd
respirometry/man/flush_water.Rd
respirometry/man/peri_pump.Rd
respirometry/man/RQ.Rd
respirometry/man/guess_when.Rd
respirometry/man/co2_add.Rd
respirometry/man/predict_pH.Rd
respirometry/man/conv_resp_unit.Rd
respirometry/man/calc_MO2.Rd
respirometry/man/Q10.Rd
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