Tools for Conducting and Analyzing Respirometry Experiments

calc_b | Calculate the metabolic scaling coefficient, b |

calc_MO2 | Calculate metabolic rate |

closed | Closed respirometry |

co2_add | Calculate CO2 to add to water |

co2_flush | Calculate CO2 to add to flush reservoir |

co2_rate | Calculate CO2 to add to a respirometer intake flow |

conv_nh4 | Convert between units of ammonia (NH3) / ammonium (NH4+) |

conv_o2 | Convert between units of oxygen partial pressure and... |

conv_resp_unit | Convert units related to respirometry |

correct_bubble | Adjust respirometer volume for bubbles |

flush_carb | Estimate carbonate chemistry after a flush |

flush_o2 | Estimate dissolved O2 after a flush |

flush_water | Find percent of water exchanged after a flush |

goal_flush_pH | Calculate goal pH of a flush reservoir to achieve the... |

guess_TA | Estimate total alkalinity from salinity |

guess_when | Estimate when the O2 level will reach a defined level |

import_firesting | Import data from a FireSting O2 transmitter |

import_presens | Import data from a PreSens O2 transmitter |

import_witrox | Import data from a Loligo Systems Witrox O2 transmitter |

make_bins | Make time bins for MO2 calculations |

max_MO2 | Maximum MO2 supported by flow rate |

mean_pH | Mean pH by [H+] |

min_flow | Minimum flow rate to support MO2 |

peri_pump | Calculate peristaltic pump gaseous flow rate |

predict_nh3 | Predict NH3 / NH4+ concentration post-respiration |

predict_pH | Predict pH post-respiration |

Q10 | Parameters of Q10 Temperature Coefficient |

respirometry | Tools for Conducting Respirometry Experiments |

RQ | Calculate respiratory quotient |

scale_MO2 | Mass-correct metabolic rate |

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