RetinalOutline: Class containing functions and data relating to retinal...

In retistruct: Retinal Reconstruction Program

Class containing functions and data relating to retinal outlines

Description

In addition to fields inherited from StitchedOutline, a RetinalOutline contains a dataset field, describing the system path to dataset directory and metadata specific to retinae and some formats of retinae

An retinalOutline object. This contains the following fields:

Super classes

retistruct::OutlineCommon -> retistruct::Outline -> retistruct::PathOutline -> retistruct::AnnotatedOutline -> retistruct::TriangulatedOutline -> retistruct::StitchedOutline -> RetinalOutline

Public fields

DVflip

TRUE if the raw data is flipped in the dorsoventral direction

side

The side of the eye (“Left” or “Right”)

dataset

File system path to dataset directory

Methods

Public methods

• RetinalOutline$new()

• RetinalOutline$clone()

Inherited methods

• retistruct::OutlineCommon$clearFeatureSets()
• retistruct::OutlineCommon$getFeatureSet()
• retistruct::OutlineCommon$getFeatureSetTypes()
• retistruct::OutlineCommon$getFeatureSets()
• retistruct::OutlineCommon$getIDs()
• retistruct::Outline$addFeatureSet()
• retistruct::Outline$getDepth()
• retistruct::Outline$getFragment()
• retistruct::Outline$getFragmentIDs()
• retistruct::Outline$getFragmentIDsFromPointIDs()
• retistruct::Outline$getFragmentPointIDs()
• retistruct::Outline$getFragmentPoints()
• retistruct::Outline$getImage()
• retistruct::Outline$getOutlineLengths()
• retistruct::Outline$getOutlineSet()
• retistruct::Outline$getPoints()
• retistruct::Outline$getPointsScaled()
• retistruct::Outline$getPointsXY()
• retistruct::Outline$mapFragment()
• retistruct::Outline$mapPids()
• retistruct::Outline$replaceImage()
• retistruct::PathOutline$insertPoint()
• retistruct::PathOutline$nextPoint()
• retistruct::PathOutline$stitchSubpaths()
• retistruct::AnnotatedOutline$addFullCut()
• retistruct::AnnotatedOutline$addPoints()
• retistruct::AnnotatedOutline$addTear()
• retistruct::AnnotatedOutline$checkTears()
• retistruct::AnnotatedOutline$computeFullCutRelationships()
• retistruct::AnnotatedOutline$computeTearRelationships()
• retistruct::AnnotatedOutline$ensureFixedPointInRim()
• retistruct::AnnotatedOutline$getFixedPoint()
• retistruct::AnnotatedOutline$getFullCut()
• retistruct::AnnotatedOutline$getFullCuts()
• retistruct::AnnotatedOutline$getRimLengths()
• retistruct::AnnotatedOutline$getRimSet()
• retistruct::AnnotatedOutline$getTear()
• retistruct::AnnotatedOutline$getTears()
• retistruct::AnnotatedOutline$labelFullCutPoints()
• retistruct::AnnotatedOutline$labelTearPoints()
• retistruct::AnnotatedOutline$removeFullCut()
• retistruct::AnnotatedOutline$removeTear()
• retistruct::AnnotatedOutline$setFixedPoint()
• retistruct::AnnotatedOutline$whichFullCut()
• retistruct::AnnotatedOutline$whichTear()
• retistruct::TriangulatedOutline$mapTriangulatedFragment()
• retistruct::TriangulatedOutline$triangulate()
• retistruct::StitchedOutline$getBoundarySets()
• retistruct::StitchedOutline$isStitched()
• retistruct::StitchedOutline$stitchFullCuts()
• retistruct::StitchedOutline$stitchTears()

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Method new()

Constructor

Usage

RetinalOutline$new(..., dataset = NULL)

Arguments

...

Parameters to superclass constructors

dataset

File system path to dataset directory

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Method clone()

The objects of this class are cloneable with this method.

Usage

RetinalOutline$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Author(s)

David Sterratt

retistruct documentation built on April 3, 2025, 5:58 p.m.