projection.RetinalReconstructedOutline: Plot projection of reconstructed dataset

In retistruct: Retinal Reconstruction Program

Description

Plot projection of reconstructed dataset

Usage

## S3 method for class 'RetinalReconstructedOutline'
projection(
  r,
  transform = identity.transform,
  projection = azimuthal.equalarea,
  axisdir = cbind(phi = 90, lambda = 0),
  proj.centre = cbind(phi = 0, lambda = 0),
  lambdalim = c(-180, 180),
  datapoints = TRUE,
  datapoint.means = TRUE,
  datapoint.contours = FALSE,
  grouped = FALSE,
  grouped.contours = FALSE,
  landmarks = TRUE,
  mesh = FALSE,
  grid = TRUE,
  image = TRUE,
  ids = r$getIDs(),
  ...
)

Arguments

r	RetinalReconstructedOutline object
transform	Transform function to apply to spherical coordinates before rotation
projection	Projection in which to display object, e.g. azimuthal.equalarea or sinusoidal
axisdir	Direction of axis (North pole) of sphere in external space
proj.centre	Location of centre of projection as matrix with column names phi (elevation) and lambda (longitude).
lambdalim	Limits of longitude (in degrees) to display
datapoints	If TRUE, display data points
datapoint.means	If TRUE, display Karcher mean of data points.
datapoint.contours	If TRUE, display contours around the data points generated using Kernel Density Estimation.
grouped	If TRUE, display grouped data.
grouped.contours	If TRUE, display contours around the grouped data generated using Kernel Regression.
landmarks	If TRUE, display landmarks.
mesh	If TRUE, display the triangular mesh used in reconstruction
grid	If TRUE, show grid lines
image	If TRUE, show the reconstructed image
ids	IDs of groups of data within a dataset, returned using getIDs.
...	Graphical parameters to pass to plotting functions

retistruct documentation built on April 4, 2020, 5:08 p.m.