projection.RetinalReconstructedOutline: Plot projection of reconstructed dataset
In retistruct: Retinal Reconstruction Program

View source: R/RetinalReconstructedOutline.R

projection.RetinalReconstructedOutline

R Documentation

Plot projection of reconstructed dataset

Description

Plot projection of reconstructed dataset

Usage

## S3 method for class 'RetinalReconstructedOutline'
projection(
  r,
  transform = identity.transform,
  projection = azimuthal.equalarea,
  axisdir = cbind(phi = 90, lambda = 0),
  proj.centre = cbind(phi = 0, lambda = 0),
  lambdalim = c(-180, 180),
  datapoints = TRUE,
  datapoint.means = TRUE,
  datapoint.contours = FALSE,
  grouped = FALSE,
  grouped.contours = FALSE,
  landmarks = TRUE,
  mesh = FALSE,
  grid = TRUE,
  image = TRUE,
  ids = r$getIDs(),
  ...
)

Arguments

`r`	`RetinalReconstructedOutline` object
`transform`	Transform function to apply to spherical coordinates before rotation
`projection`	Projection in which to display object, e.g. `azimuthal.equalarea` or `sinusoidal`
`axisdir`	Direction of axis (North pole) of sphere in external space
`proj.centre`	Location of centre of projection as matrix with column names `phi` (elevation) and `lambda` (longitude).
`lambdalim`	Limits of longitude (in degrees) to display
`datapoints`	If `TRUE`, display data points
`datapoint.means`	If `TRUE`, display Karcher mean of data points.
`datapoint.contours`	If `TRUE`, display contours around the data points generated using Kernel Density Estimation.
`grouped`	If `TRUE`, display grouped data.
`grouped.contours`	If `TRUE`, display contours around the grouped data generated using Kernel Regression.
`landmarks`	If `TRUE`, display landmarks.
`mesh`	If `TRUE`, display the triangular mesh used in reconstruction
`grid`	If `TRUE`, show grid lines
`image`	If `TRUE`, show the reconstructed image
`ids`	IDs of groups of data within a dataset, returned using `getIDs`.
`...`	Graphical parameters to pass to plotting functions